Skin element: Difference between revisions
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{{CategoryTree | {{CategoryTree | ||
|Parents= | |Parents= | ||
* 5. Prophages and mobile genetic elements | * 5. [[Prophages and mobile genetic elements]] | ||
** 5.1. Prophages | ** 5.1. [[Prophages]] | ||
|Neighbours= | |Neighbours= | ||
* 5.1.1. [[PBSX prophage]] | * 5.1.1. [[PBSX prophage]] | ||
* 5.1.2. [[SPß prophage]] | * 5.1.2. [[SPß prophage]] | ||
* 5.1.3. [[Skin element]] | * 5.1.3. [[Skin element]] | ||
* 5.1.4. [[Phage-related functions]] | * 5.1.4. [[Prophage 1]] | ||
* 5.1.5. [[Prophage 3]] | |||
* 5.1.6. [[Phage-related functions]] | |||
|Related= | |Related= | ||
* [[SknR regulon]] | |||
|}} | |}} | ||
== Important note== | |||
* In 168, the Skin element disrupts the ''[[sigK]]'' gene | |||
* A strain devoid of the [[Skin element]] (1A884) is available at the [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A884&Search=1A884 BGSC], {{PubMed|9537360}} | |||
* A strain devoid of [[PBSX prophage]] , [[SP-beta prophage]] and the [[Skin element]] (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in [[Jan Maarten van Dijl]]'s lab {{PubMed|12949151}} | |||
* deletion of the skin element results in an increased rate of spontaneous [[germination]] due to lower expression of [[GerE]] {{PubMed|26279233}} | |||
== Genes in this functional category == | |||
* ''[[arsB]]'' | |||
* ''[[arsC]]'' | |||
* ''[[arsR]]'' | |||
* ''[[as-bsrH]]'' | |||
*'' [[bsrH]]'' | |||
* ''[[cwlA]]'' | |||
* ''[[phrE]]'' | |||
* ''[[rapE]]'' | |||
* ''[[ratA]]'' | |||
* ''[[sknR]]'' | |||
* ''[[spoIVCA]]'' | |||
* ''[[txpA]]'' | |||
* ''[[yqaB]]'' | |||
* ''[[yqaC]]'' | |||
* ''[[yqaD]]'' | |||
* ''[[yqaF]]'' | |||
* ''[[yqaG]]'' | |||
* ''[[yqaH]]'' | |||
* ''[[yqaI]]'' | |||
* ''[[yqaJ]]'' | |||
* ''[[yqaK]]'' | |||
* ''[[yqaL]]'' | |||
* ''[[yqaM]]'' | |||
* ''[[yqaN]]'' | |||
* ''[[yqaO]]'' | |||
* ''[[yqaP]]'' | |||
* ''[[yqaQ]]'' | |||
* ''[[yqaR]]'' | |||
* ''[[yqaS]]'' | |||
* ''[[yqaT]]'' | |||
* ''[[yqbA]]'' | |||
* ''[[yqbB]]'' | |||
* ''[[yqbC]]'' | |||
* ''[[yqbD]]'' | |||
* ''[[yqbE]]'' | |||
* ''[[yqbF]]'' | |||
* ''[[yqbG]]'' | |||
* ''[[yqbH]]'' | |||
* ''[[yqbI]]'' | |||
* ''[[yqbJ]]'' | |||
* ''[[yqbK]]'' | |||
* ''[[yqbM]]'' | |||
* ''[[yqbN/1]]'' | |||
* ''[[yqbN/2]]'' | |||
* ''[[yqbO]]'' | |||
* ''[[yqbP]]'' | |||
* ''[[yqbQ]]'' | |||
* ''[[yqbR]]'' | |||
* ''[[yqbS]]'' | |||
* ''[[yqbT]]'' | |||
* ''[[yqcA]]'' | |||
* ''[[yqcB]]'' | |||
* ''[[yqcC]]'' | |||
* ''[[yqcD]]'' | |||
* ''[[yqcE]]'' | |||
* ''[[yqcF]]'' | |||
* ''[[yqcG]]'' | |||
* ''[[yqcI]]'' | |||
* ''[[yqcK]]'' | |||
* ''[[yqdA]]'' | |||
* ''[[yqxG]]'' | |||
* ''[[yqxH]]'' | |||
* ''[[yqxI]]'' | |||
* ''[[yqxJ]]'' | |||
* ''[[yqzI]]'' | |||
* ''[[yqzN]]'' | |||
* ''[[yqzO]]'' | |||
==Key publications== | |||
<pubmed> 20889742 9537360 8969508 8760915 7704261 12949151 </pubmed> | |||
=Back to [[categories]]= | |||
Latest revision as of 15:19, 19 August 2015
| Parent categories | |
| Neighbouring categories |
|
| Related categories | |
Important note
- In 168, the Skin element disrupts the sigK gene
- A strain devoid of the Skin element (1A884) is available at the BGSC, PubMed
- A strain devoid of PBSX prophage , SP-beta prophage and the Skin element (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in Jan Maarten van Dijl's lab PubMed
- deletion of the skin element results in an increased rate of spontaneous germination due to lower expression of GerE PubMed
Genes in this functional category
- arsB
- arsC
- arsR
- as-bsrH
- bsrH
- cwlA
- phrE
- rapE
- ratA
- sknR
- spoIVCA
- txpA
- yqaB
- yqaC
- yqaD
- yqaF
- yqaG
- yqaH
- yqaI
- yqaJ
- yqaK
- yqaL
- yqaM
- yqaN
- yqaO
- yqaP
- yqaQ
- yqaR
- yqaS
- yqaT
- yqbA
- yqbB
- yqbC
- yqbD
- yqbE
- yqbF
- yqbG
- yqbH
- yqbI
- yqbJ
- yqbK
- yqbM
- yqbN/1
- yqbN/2
- yqbO
- yqbP
- yqbQ
- yqbR
- yqbS
- yqbT
- yqcA
- yqcB
- yqcC
- yqcD
- yqcE
- yqcF
- yqcG
- yqcI
- yqcK
- yqdA
- yqxG
- yqxH
- yqxI
- yqxJ
- yqzI
- yqzN
- yqzO
Key publications
<pubmed> 20889742 9537360 8969508 8760915 7704261 12949151 </pubmed>