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Biofilms are the result of the multicellular lifestyle of ''B. subtilis''. They are characterized by the formation of a matrix polysaccharide and an amyloid-like protein, [[TasA]].


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''sinR''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''sin, flaD ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator of post-exponential-phase responses genes
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[biofilm formation]]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm], [http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 12 kDa, 7.177 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 333 bp, 111 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sinI]]'', ''[[tasA]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14392&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:sinR_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}


__TOC__
[[File:Example.jpg]]
 
==[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation in ''Subti''Pathways]==
 
==Labs working on biofilm formation==
* [[Daniel Kearns]]
* [[Oscar Kuipers]]
* [[Beth Lazazzera]]
* [[Richard Losick]]
* [[Nicola Stanley-Wall]]
 
==Key genes and operons involved in biofilm  formation==
* matrix polysaccharide synthesis:
** ''[[epsA]]-[[epsB]]-[[epsC]]-[[epsD]]-[[epsE]]-[[epsF]]-[[epsG]]-[[epsH]]-[[epsI]]-[[epsJ]]-[[epsK]]-[[epsL]]-[[epsM]]-[[epsN]]-[[epsO]]''
* amyloid protein synthesis
** ''[[yqxM]]-[[sipW]]-[[tasA]]''
* regulation
** [[SlrR]]
** [[SlrA]]
** [[SinR]]
** [[SinI]]
** [[PtkA]]
** [[TkmA]]
** [[PtpZ]]
** [[DegU]]
** [[RacX]]
* biofilm disassembly
** [[YlmE]]
* other proteins required for biofilm formation
** [[SpeA]]
** [[YmcA]]
** [[YxaB]]
 
==Key reviews==
<pubmed>19054118 19054118 16787201 9891794 20890834  </pubmed>
* additional reviews: {{PubMed|20735481}}

Latest revision as of 16:46, 11 March 2012