Jump to content

CheY: Difference between revisions

From SubtiWiki
 
(28 intermediate revisions by 6 users not shown)
Line 1: Line 1:
* '''Description:''' [[two-component systems|two-component]] response regulator, modulation of flagellar switch bias <br/><br/>
{{#bank: CheY}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''cheY''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''cheB ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || [[two-component systems|two-component]] response regulator
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || modulation of flagellar switch bias
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 13 kDa, 4.746 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 360 bp, 120 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fliY]]'', ''[[fliZ]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13506&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:cheY_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}
__TOC__
<br/><br/>
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU16330
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/fla-che.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10258]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:''' phosphorylated by [[CheA]] on an Asp residue
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''Interactions:''' [[CheY]]-P-[[CheC]], [[CheA]]-[[CheY]]
* '''Localization:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P24072 P24072]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU16330]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''
** ''[[flgB]]-[[flgC]]-[[fliE]]-[[fliF]]-[[fliG]]-[[fliH]]-[[fliI]]-[[fliJ]]-[[ylxF]]-[[fliK]]-[[ylxG]]-[[flgE]]-[[fliL]]-[[fliM]]-[[fliY]]-[[cheY]]-[[fliZ]]-[[fliP]]-[[fliQ]]-[[fliR]]-[[flhB]]-[[flhA]]-[[flhF]]-[[ylxH]]-[[cheB]]-[[cheA]]-[[cheW]]-[[cheC]]-[[cheD]]-[[sigD]]-[[swrB]]'' {{PubMed|9657996,8157612,15175317}}
** ''[[ylxF]]-[[fliK]]-[[ylxG]]-[[flgE]]-[[fliL]]-[[fliM]]-[[fliY]]-[[cheY]]-[[fliZ]]-[[fliP]]-[[fliQ]]-[[fliR]]-[[flhB]]-[[flhA]]-[[flhF]]-[[ylxH]]-[[cheB]]-[[cheA]]-[[cheW]]-[[cheC]]-[[cheD]]-[[sigD]]-[[swrB]]'' {{PubMed|20233303}}
* '''[[Sigma factor]]:'''
** ''[[flgB]]'': [[SigA]] {{PubMed|9657996}}, [[SigD]] {{PubMed|9657996}}
** ''[[ylxF]]'': [[SigD]] {{PubMed|20233303}}
* '''Regulation:'''
** repressed under conditions that trigger sporulation ([[Spo0A]]) {{PubMed|14651647}}
* '''Regulatory mechanism:'''
** [[Spo0A]]: transcription repression {{PubMed|14651647}}
** [[CodY]]: transcription repression {{PubMed|12730172}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed>19494578,,10094672 20122866  </pubmed>
==Original Publications==
<pubmed>,17908686,10196193,,12920116,8369293,9194713,14651647, 9657996,8157612,15175317</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:43, 3 July 2015