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SpoVT: Difference between revisions

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* '''Description:''' transcription activator and repressor of SigG-dependent genes <br/><br/>
{{#bank: SpoVT}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''spoVT''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yabL ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator
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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of forespore gene expression
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/lys_threo.html Lys, Thr], [http://subtiwiki.uni-goettingen.de/pathways/stress_response.html Stress]'''
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 4.676 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 534 bp, 178 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mfd]]'', ''[[yabM]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11832&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:spoVT_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}
__TOC__
<br/><br/><br/><br/><br/><br/>
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU00560
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoVT.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10119]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):''' [[AbrB]], [[Abh]] (only the N-terminal domains (aa 1 through 50) are conserved between SpoVT and the two paralogues)
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''Interactions:'''
* '''Localization:''' Cytoplasm (Homogeneous) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
=== Database entries ===
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2W1R 2W1R] (full-length),  [http://www.rcsb.org/pdb/explore.do?structureId=2W1T 2W1T] (C-terminal domain)
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P37554 P37554]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00560]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''spoVT''
* '''[[Sigma factor]]:''' [[SigG]]
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>16497325,18996130,15063493,, 16479537, 16159768  </pubmed>

Latest revision as of 12:46, 2 April 2014