NrdI: Difference between revisions
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{{#bank: nrdI}} | |||
* '''Description:''' flavodoxin, ribonucleoside-diphosphate reductase <br/><br/> | * '''Description:''' flavodoxin, ribonucleoside-diphosphate reductase <br/><br/> | ||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17370 nrdI] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17370 nrdI] | ||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http:// | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=NrdI NrdI] | ||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/ | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=nrdI nrdI]''' | ||
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 14 kDa, 8.58 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 14 kDa, 8.58 | ||
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<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nrdI_1868617_1869009_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:nrdI_expression.png|500px]] | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nrdI_1868617_1869009_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:nrdI_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17370]] | ||
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=== Database entries === | === Database entries === | ||
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU17370&redirect=T BSU17370] | |||
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/nrdIEF-ymaB.html] | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/nrdIEF-ymaB.html] | ||
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=== Database entries === | === Database entries === | ||
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU17370&redirect=T BSU17370] | |||
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1RLJ 1RLJ] | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1RLJ 1RLJ] | ||
Latest revision as of 09:54, 7 December 2016
- Description: flavodoxin, ribonucleoside-diphosphate reductase
| Gene name | nrdI |
| Synonyms | ymaA |
| Essential | yes PubMed |
| Product | ribonucleoside-diphosphate reductase |
| Function | synthesis of deoxyribonucleoside triphosphates |
| Gene expression levels in SubtiExpress: nrdI | |
| Interactions involving this protein in SubtInteract: NrdI | |
| Metabolic function and regulation of this protein in SubtiPathways: nrdI | |
| MW, pI | 14 kDa, 8.58 |
| Gene length, protein length | 390 bp, 130 aa |
| Immediate neighbours | ymzA, nrdE |
| Gene sequence (+200bp) | Protein sequence |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Categories containing this gene/protein
biosynthesis/ acquisition of nucleotides, essential genes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17370
Phenotypes of a mutant
essential PubMed
Database entries
- BsubCyc: BSU17370
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: nrdI family (according to Swiss-Prot)
- Paralogous protein(s): YosM
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU17370
- Structure: 1RLJ
- UniProt: P50618
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
<pubmed> 17229208 </pubmed>
Original Publications
Additional publications: PubMed <pubmed>16885274,8969495, 12682299 ,20525796</pubmed>