Jump to content

MutM: Difference between revisions

From SubtiWiki
Sroppel (talk | contribs)
No edit summary
No edit summary
 
(25 intermediate revisions by 6 users not shown)
Line 1: Line 1:
* '''Description:''' formamidopyrimidine-DNA glycosidase <br/><br/>
{{#bank: MutM}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''mutM''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ytaE ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || formamidopyrimidine-DNA glycosidase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || DNA repair
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 8.889 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 834 bp, 278 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytaF]]'', ''[[polA]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14868&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:mutM_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}
__TOC__
<br/><br/>
=The gene=
=== Basic information ===
* '''Coordinates:'''
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12628]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''Interactions:'''
* '''Localization:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2F5S 2F5S] (complex with oxoG:C, Geobacillus stearothermophilus)
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O34403 O34403]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU29080 BSU29080]
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.2.2.23 3.2.2.23]
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''[[Sigma factor]]:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Latest revision as of 11:54, 1 April 2015