Jump to content

ComP: Difference between revisions

From SubtiWiki
No edit summary
 
(9 intermediate revisions by 3 users not shown)
Line 1: Line 1:
* '''Description:''' [[two-component systems|two-component]] sensor kinase, detects extracellular [[ComX]] <br/><br/>
{{#bank: ComP}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''comP''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || [[two-component systems|two-component]] sensor kinase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of [[genetic competence]] and [[quorum sensing]]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31690 comP]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/ComP ComP]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 89 kDa, 7.997 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2307 bp, 769 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[comA]]'', ''[[comX]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31690 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31690 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31690 Advanced_DNA]
|-
|-
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:comP_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=comP_3253529_3255838_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:comP_expression.png|500px]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[genetic competence]]}},
{{SubtiWiki category|[[protein modification]]}},
{{SubtiWiki category|[[transcription factors and their control]]}},
{{SubtiWiki category|[[quorum sensing]]}},
{{SubtiWiki category|[[membrane proteins]]}},
{{SubtiWiki category|[[phosphoproteins]]}}
= This gene is a member of the following [[regulons]] =
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU31690
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/comP.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10380]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' autophosphorylation, phosphorylation of [[ComA]]
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:''' eight transmembrane segments
* '''Modification:''' autophosphorylation on a His residue
* '''Cofactor(s):'''
* '''Effectors of protein activity:''' [[ComX]] (extracellular)
* '''[[SubtInteract|Interactions]]:'''
** [[ComP]]-[[ComA]]
* '''[[Localization]]:''' cell membrane {{PubMed|18763711}}
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/Q99027 Q99027]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU31690]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''comP'' {{PubMed|9274030}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=comP_3253529_3255838_-1 comP] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed>12576575 </pubmed>
==Original Publications==
<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711  </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 15:41, 13 March 2015