Jump to content

ArgC: Difference between revisions

From SubtiWiki
No edit summary
No edit summary
 
(7 intermediate revisions by 2 users not shown)
Line 1: Line 1:
* '''Description:''' N-acetyl-g-glutamyl-phosphate reductase <br/><br/>
{{#bank: ArgC}}
{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''argC''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || N-acetyl-g-glutamyl-phosphate reductase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of arginine
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11190 argC]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=argC argC]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 37 kDa, 5.167 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1038 bp, 346 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yitZ]]'', ''[[argJ]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11190 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11190 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11190 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:argC_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=argC_1195034_1196071_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:argC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11190]]
|-
|}


__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/><br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[biosynthesis/ acquisition of amino acids]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[AhrC regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU11190
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU11190&redirect=T BSU11190]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/argCJBD-carAB-argF.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10191]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' N-acetyl-L-glutamate 5-semialdehyde + NADP<sup>+</sup> + phosphate = N-acetyl-5-glutamyl phosphate + NADPH (according to Swiss-Prot)
* '''Protein family:''' Type 1 subfamily (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU11190&redirect=T BSU11190]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P23715 P23715]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU11190]
* '''E.C. number:''' [http://www.expasy.org/enzyme/1.2.1.38 1.2.1.38]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[argC]]-[[argJ]]-[[argB]]-[[argD]]-[[carA]]-[[carB]]-[[argF]]'' {{PubMed|7511775}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=argC_1195034_1196071_1 argC] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] {{PubMed|7511775}}
* '''Regulation:'''
** repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
** repressed by arginine ([[AhrC]]) {{PubMed|1312212}}
* '''Regulatory mechanism:'''
** [[AhrC]]: transcription repression {{PubMed|1312212}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>6096675,2117746,7511775,12107147, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 11:10, 21 May 2014