Jump to content

Pyk: Difference between revisions

From SubtiWiki
Sroppel (talk | contribs)
No edit summary
 
(86 intermediate revisions by 11 users not shown)
Line 1: Line 1:
* '''Description:''' catalyzes the transfere of a phosphate from phosphoennolpyruvate to ADT and synthesis of pyruvate <br/><br/>
{{#bank: Pyk}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''pyk''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''pykA''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || Pyruvate kinase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || kinase, transferase
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 61,9 kDa, 4.88
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1755 bp, 585 amino acids
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pfkA]]'', ''[[ytzA]]''
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/pyk_nucleotide.txt    Gene sequence      (+200bp)  ]'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/pyk_protein.txt Protein sequence]'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:pyk_context.gif]]
|-
|}
__TOC__
<br/><br/><br/><br/><br/><br/><br/><br/><br/><br/>
=The gene=
=== Basic information ===
* '''Coordinates:''' 2983830 - 2985584
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/pfkA-pyk-ytzA.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12661]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' ATP + pyruvate = ADP + phosphoenolpyruvate
* '''Protein family:''' pyruvate kinase family, (C-terminal section: PEP-utilizing enzyme family)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:''' phosphorylation
* '''Cofactor(s):''' magnesium ion, potassium
* '''Effectors of protein activity:'''
* '''Interactions:''' Pyk-[[PfkA]]
* '''Localization:''' cytoplasm [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
=== Database entries ===
* '''Structure:'''
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P80885]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU29180]
* '''E.C. number:''' [http://www.expasy.org/enzyme/2.7.1.40]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[pfkA]] [[pyk]]''
* '''Sigma factor:'''
* '''Regulation:''' twofold induced by glucose
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
=Labs working on this gene/protein=
[[Stülke|Jörg Stülke]], University of Göttingen, Germany
[http://wwwuser.gwdg.de/~genmibio/stuelke.html Homepage]
=Your additional remarks=
=References=
# Ludwig, H., Homuth, G., Schmalisch, M., Dyka, F. M., Hecker, M., and Stülke, J. (2001) Transcription of glycolytic genes and operons in ''Bacillus subtilis'': evidence for the presence of multiple levels of control of the ''gapA'' operon. Mol Microbiol 41, 409-422.[http://www.ncbi.nlm.nih.gov/sites/entrez/11489127 PubMed]

Latest revision as of 17:13, 16 May 2014