Jump to content

Map: Difference between revisions

From SubtiWiki
No edit summary
No edit summary
 
(15 intermediate revisions by 4 users not shown)
Line 1: Line 1:
* '''Description:''' methionine aminopeptidase <br/><br/>
{{#bank: Map}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''map''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''mapA ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || methionine aminopeptidase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || removal of N-terminal methionine from nascent proteins
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)], [http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 6.393 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 744 bp, 248 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[adk]]'', ''[[infA]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11914&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:map_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=mapA_146527_147273_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:map_expression.png|500px]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/><br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[translation]]}},
{{SubtiWiki category|[[protein modification]]}},
{{SubtiWiki category|[[essential genes]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[stringent response]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU01380
===Phenotypes of a mutant ===
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10447]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides (according to Swiss-Prot)
* '''Protein family:''' peptidase M24A family (according to Swiss-Prot)
* '''Paralogous protein(s):''' [[YflG]]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
** cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2MAT 2MAT] (from ''Escherichia coli'', 46% identity, 65% similarity) {{PubMed|10387007}}
* '''UniProt:''' [http://www.uniprot.org/uniprot/P19994 P19994]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU01380]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=mapA_146527_147273_1 map] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
** [[RelA]] dependent downregulation (Class I) during stringent response {{PubMed|11948165}}
* '''Regulatory mechanism:'''
* '''Additional information:''' strongly expressed
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>16207374,8635744,, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 09:52, 17 April 2014