Jump to content

SplA: Difference between revisions

From SubtiWiki
No edit summary
No edit summary
 
(11 intermediate revisions by 3 users not shown)
Line 1: Line 1:
* '''Description:''' transcriptional repressor of the spore photoproduct lyase ''[[splA]]-[[splB]]'' operon <br/><br/>
{{#bank: SplA}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''splA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ykxI ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of the ''[[splA]]-[[splB]]'' operon
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 9 kDa, 4.419 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 237 bp, 79 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ptsI]]'', ''[[splB]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13265&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:splA_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}
__TOC__
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[DNA repair/ recombination]]}},
{{SubtiWiki category|[[transcription factors and their control]]}},
{{SubtiWiki category|[[sporulation proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigG regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU13920
[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=splA_1461453_1461692_1 Expression]
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/splAB.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10202]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P37955 P37955]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU13920]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[splA]]-[[splB]]'' {{PubMed|8021181}}
* '''[[Sigma factor]]:''' [[SigG]] {{PubMed|15699190,8021181}}
* '''Regulation:''' expressed during sporulation in the forespore ([[SigG]]) {{PubMed|16497325}}
* '''Regulatory mechanism:'''
** negative autoregulation by [[SplA]] {{PubMed|8021181}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed> 15699190,8021181</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 13:34, 2 April 2014