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RecD2: Difference between revisions

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* '''Description:''' similar to exodeoxyribonuclease V alpha subunit <br/><br/>
* '''Description:''' 5'-3' DNA helicase replication fork progression <br/><br/>


{| align="right" border="1" cellpadding="2"  
{| align="right" border="1" cellpadding="2"  
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
|-
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
|style="background:#ABCDEF;" align="center"| '''Product''' || 5'-3' DNA helicase
|-
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|style="background:#ABCDEF;" align="center"|'''Function''' || replication fork progression
|-
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU27480 yrrC]
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU27480 RecD2]
|-
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YrrC YrrC]
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RecD2 RecD2]
|-
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 88 kDa, 5.08   
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 88 kDa, 5.08   
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= [[Categories]] containing this gene/protein =
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[genetics/ other]]}}
{{SubtiWiki category|[[DNA replication]]}}


= This gene is a member of the following [[regulons]] =
= This gene is a member of the following [[regulons]] =
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===Phenotypes of a mutant ===
===Phenotypes of a mutant ===
* modest increase in spontaneous mutation rate {{PubMed|24443534}}


=== Database entries ===
=== Database entries ===
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* '''Kinetic information:'''
* '''Kinetic information:'''


* '''Domains:'''  
* '''[[Domains]]:'''  


* '''Modification:'''
* '''Modification:'''


* '''Cofactor(s):'''
* '''[[Cofactors]]:'''


* '''Effectors of protein activity:'''
* '''Effectors of protein activity:'''


* '''[[SubtInteract|Interactions]]:'''
* '''[[SubtInteract|Interactions]]:'''
** [[SsbA]]-[[YrrC]] {{PubMed|21170359}}
** [[SsbA]]-[[RecD2]] {{PubMed|24443534,21170359}}


* '''[[Localization]]:'''
* '''[[Localization]]:'''
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* '''Operon:'''  
* '''Operon:'''  


* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrrC_2806286_2808682_-1 yrrC] {{PubMed|22383849}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrrC_2806286_2808682_-1 recD2] {{PubMed|22383849}}


* '''Sigma factor:'''  
* '''[[Sigma factor]]:'''  


* '''Regulation:'''  
* '''Regulation:'''  
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=References=
=References=
'''Additional publications:''' {{PubMed|21170359}}
<pubmed> 21170359 24443534 </pubmed>
 
[[Category:Protein-coding genes]]
[[Category:Protein-coding genes]]

Latest revision as of 17:51, 22 January 2014

  • Description: 5'-3' DNA helicase replication fork progression

Gene name yrrC
Synonyms
Essential no
Product 5'-3' DNA helicase
Function replication fork progression
Gene expression levels in SubtiExpress: RecD2
Interactions involving this protein in SubtInteract: RecD2
MW, pI 88 kDa, 5.08
Gene length, protein length 2394 bp, 798 aa
Immediate neighbours yrrD, yrrB
Sequences Protein DNA DNA_with_flanks
Genetic context
This image was kindly provided by SubtiList
Expression at a glance   PubMed















Categories containing this gene/protein

DNA replication

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU27480

Phenotypes of a mutant

  • modest increase in spontaneous mutation rate PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

<pubmed> 21170359 24443534 </pubmed>

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