Difference between revisions of "YtcC"
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|style="background:#ABCDEF;" align="center"|'''Function''' || lipopolysaccharide biosynthesis | |style="background:#ABCDEF;" align="center"|'''Function''' || lipopolysaccharide biosynthesis | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30880 ytcC] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 45 kDa, 9.588 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 45 kDa, 9.588 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytcB]]'', ''[[ytxO]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytcB]]'', ''[[ytxO]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU30880 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU30880 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU30880 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ytcC_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ytcC_context.gif]] | ||
Revision as of 13:41, 13 May 2013
- Description: sporulation protein, similar to lipopolysaccharide N-acetylglucosaminyltransferase
| Gene name | ytcC |
| Synonyms | |
| Essential | no |
| Product | sporulation protein |
| Function | lipopolysaccharide biosynthesis |
| Gene expression levels in SubtiExpress: ytcC | |
| MW, pI | 45 kDa, 9.588 |
| Gene length, protein length | 1221 bp, 407 aa |
| Immediate neighbours | ytcB, ytxO |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
SigK regulon, Efp-dependent proteins
The gene
Basic information
- Locus tag: BSU30880
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s): CotSA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34413
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
- translation is likely to require Efp due to the presence of several consecutive proline residues PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
Ritsuko Kuwana, Yasuhiro Kasahara, Machiko Fujibayashi, Hiromu Takamatsu, Naotake Ogasawara, Kazuhito Watabe
Proteomics characterization of novel spore proteins of Bacillus subtilis.
Microbiology (Reading): 2002, 148(Pt 12);3971-3982
[PubMed:12480901]
[WorldCat.org]
[DOI]
(P p)
