Difference between revisions of "YqfB"

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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 417 bp, 139 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 417 bp, 139 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqfC]]'', ''[[yqfA]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqfC]]'', ''[[floA]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14479&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14479&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
Line 105: Line 105:
 
=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''[[yqeZ]]-[[yqfA]]-[[yqfB]]'' {{PubMed|11866510}}
+
* '''Operon:''' ''[[yqeZ]]-[[floA]]-[[yqfB]]'' {{PubMed|11866510}}
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqfB_2617005_2617424_-1 yqfB] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqfB_2617005_2617424_-1 yqfB] {{PubMed|22383849}}

Revision as of 17:27, 6 July 2012

  • Description: resistence protein (against sublancin), accessory role in resistance to cefuroxime

Gene name yqfB
Synonyms
Essential no
Product resistence protein (against sublancin)
Function resistance against sublancin
MW, pI 15 kDa, 11.171
Gene length, protein length 417 bp, 139 aa
Immediate neighbours yqfC, floA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YqfB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YqfB expression.png


















Categories containing this gene/protein

cell envelope stress proteins (controlled by SigM, V, W, X, Y), resistance against toxins/ antibiotics, membrane proteins

This gene is a member of the following regulons

SigW regulon

The gene

Basic information

  • Locus tag: BSU25370

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Felix Dempwolff, Heiko M Möller, Peter L Graumann
Synthetic motility and cell shape defects associated with deletions of flotillin/reggie paralogs in Bacillus subtilis and interplay of these proteins with NfeD proteins.
J Bacteriol: 2012, 194(17);4652-61
[PubMed:22753055] [WorldCat.org] [DOI] (I p)

Bronwyn G Butcher, John D Helmann
Identification of Bacillus subtilis sigma-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli.
Mol Microbiol: 2006, 60(3);765-82
[PubMed:16629676] [WorldCat.org] [DOI] (P p)

Min Cao, Phil A Kobel, Maud M Morshedi, Ming Fang Winston Wu, Chris Paddon, John D Helmann
Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches.
J Mol Biol: 2002, 316(3);443-57
[PubMed:11866510] [WorldCat.org] [DOI] (P p)