RnmV

From SubtiWiki
Revision as of 20:49, 8 April 2009 by Jstuelk (talk | contribs) (Labs working on this gene/protein)
Jump to: navigation, search
  • Description: RNase M5

Gene name rnmV
Synonyms yabF
Essential no
Product endoribonuclease M5
Function 5S ribosomal RNA maturation
MW, pI 20 kDa, 6.681
Gene length, protein length 558 bp, 186 aa
Immediate neighbours yabE, ksgA
Gene sequence (+200bp) Protein sequence
Genetic context
RnmV context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains: N-terminal part: Toprim domain PubMed
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: Cytoplasm (Homogeneous) PubMed cytoplasm (homogeneous) PubMed

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Ciaran Condon, IBPC, Paris, France Homepage

Your additional remarks

References

  1. Meile et al. (2006) Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory Proteomics 6: 2135-2146. PubMed
  1. Meile et al. (2006) Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory Proteomics 6(7): 2135-46. PubMed
  2. Condon et al. (2001) Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: mature 5S rRNA is dispensable for ribosome function. RNA 7: 242-253. PubMed
  3. Condon, C., Rourera, J., Brechemier-Baey, D. & Putzer, H. (2002). Ribonuclease M5 has few, if any, mRNA substrates in Bacillus subtilis. J Bacteriol 184, 2845-2849. PubMed
  4. Allemand et al. (2005) The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member. Nucl. Acids Res 33: 4368-4376. PubMed
  5. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed