Difference between revisions of "DgrA"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[MotA]] activity | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[MotA]] activity | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22910 ypfA] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YpfA YpfA] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YpfA YpfA] | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypfB]]'', ''[[ypeB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypfB]]'', ''[[ypeB]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22910 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22910 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22910 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ypfA_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ypfA_context.gif]] | ||
Revision as of 13:10, 13 May 2013
- Description: c-di-GMP receptor protein, inhibits motility during entry into sporulation
| Gene name | ypfA |
| Synonyms | jofA |
| Essential | no |
| Product | c-di-GMP receptor protein |
| Function | control of MotA activity |
| Gene expression levels in SubtiExpress: ypfA | |
| Interactions involving this protein in SubtInteract: YpfA | |
| MW, pI | 24 kDa, 7.878 |
| Gene length, protein length | 651 bp, 217 aa |
| Immediate neighbours | ypfB, ypeB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU22910
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- contains a C-terminal PilZ domain PubMed
- Modification:
- Cofactor(s):
- c-di-GMP PubMed
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P38491
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
