ydeE

168

similar to transcription factor (AraC family)

Locus: BSU_05170

Molecular weight: 33.10 kDa

Isoelectric point: 7.22

Protein length: 290 aa

Gene length: 873 bp

Function: unknown

Product: unknown

Essential: no

E.C.: null

Synonyms: ydeE

Genomic Context

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List of homologs in different organisms, belongs to COG3708 (Galperin et al., 2021)

Gene

Coordinates: 563,614  564,486

The protein

Protein family

• AraC family

Domains

• HTH araC/xylS-type domain (aa 8-106) (according to UniProt)

Structure

• 1XS9 (PDB) (from E. coli, N-terminal HTH araC/xylS-type domain, 33% identity) PubMed
• P96662 (AlphaFold)

Localization

• cytoplasm (according to Swiss-Prot)

Biological materials

Mutant

• MGNA-C081 (ydeE::erm), available at the NBRP B. subtilis, Japan
• BKE05170 (ydeE::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTTATTTGGCCTCCTTTA,  downstream forward: _UP4_TAATACGTTTTTCAATCAGA
• BKK05170 (ydeE::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTTATTTGGCCTCCTTTA,  downstream forward: _UP4_TAATACGTTTTTCAATCAGA

References

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