ygzD

168

similar to transcription regulator (Xre family)

Locus: BSU_08899

Molecular weight: 7.60 kDa

Isoelectric point: 7.833

Protein length: 66 aa

Gene length: 201 bp

Function: unknown

Product: putative HTH-type transcriptional regulator

Essential: -

Synonyms: ygzD

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG1476 (Galperin et al., 2021)

Gene

Coordinates: 966,671  966,871

The protein

Protein family

• Xre family

Domains

• HTH cro/C1-type domain (aa 5-59) (according to UniProt)

Structure

• 1UTX (PDB) (from Enterococcus faecalis, 41% identity) PubMed
• C0H3X9 (AlphaFold)

Expression and Regulation

Operons

• Genes: ygzD-ygaO

  Description: PubMed

  Regulatory mechanism

  • YgzD: repression, PubMed, in ygzD regulon

Biological materials

Mutant

• BKE08899 (ygzD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCATGACGTCTGTCCCCT,  downstream forward: _UP4_TTTTGGTTAGAGGAGGAAAA
• BKK08899 (ygzD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCATGACGTCTGTCCCCT,  downstream forward: _UP4_TTTTGGTTAGAGGAGGAAAA

References

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