YdiO

• Description: similar to DNA-3-methyladenine glycosidase II
  
  

Gene name	ydiO
Synonyms
Essential	yes PubMed
Product	unknown
Function	BsuM DNA modification
Gene expression levels in SubtiExpress: ydiO
MW, pI	48 kDa, 7.659
Gene length, protein length	1281 bp, 427 aa
Immediate neighbours	ydzV, ydiP
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

DNA restriction/ modification, essential genes, prophage 3

This gene is a member of the following regulons

LexA regulon

The gene

Basic information

• Locus tag: BSU06060

Phenotypes of a mutant

essential PubMed, mutation is only possible in a ydiR, ydiS, or ydjA background (i. e., in the absence of the BsuM DNA restriction system) PubMed

Database entries

• BsubCyc: BSU06060

• DBTBS entry: [1]

• SubtiList entry: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family:

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• BsubCyc: BSU06060

• Structure:

• UniProt: O34939

• KEGG entry: [3]

• E.C. number:

Expression and regulation

• Operon: ydiO-ydiP PubMed

• Expression browser: ydiO PubMed

• Sigma factor:

• Regulation:
  • induced by DNA damage (LexA) PubMed

• Regulatory mechanism:
  • LexA: transcription repression PubMed

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Tomoko Maehara, Mitsuhiro Itaya, Mitsuo Ogura, Teruo Tanaka
Effect of Bacillus subtilis BsuM restriction-modification on plasmid transfer by polyethylene glycol-induced protoplast fusion.
FEMS Microbiol Lett: 2011, 325(1);49-55
[PubMed:22092861] [WorldCat.org] [DOI] (I p)

Nora Au, Elke Kuester-Schoeck, Veena Mandava, Laura E Bothwell, Susan P Canny, Karen Chachu, Sierra A Colavito, Shakierah N Fuller, Eli S Groban, Laura A Hensley, Theresa C O'Brien, Amish Shah, Jessica T Tierney, Louise L Tomm, Thomas M O'Gara, Alexi I Goranov, Alan D Grossman, Charles M Lovett
Genetic composition of the Bacillus subtilis SOS system.
J Bacteriol: 2005, 187(22);7655-66
[PubMed:16267290] [WorldCat.org] [DOI] (P p)

Hideyuki Ohshima, Satoshi Matsuoka, Kei Asai, Yoshito Sadaie
Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg.
J Bacteriol: 2002, 184(2);381-9
[PubMed:11751814] [WorldCat.org] [DOI] (P p)