YjdI

• Description: similiar to Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase
  
  

Gene name	yjdI
Synonyms
Essential	no
Product	Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase
Function	maturation of tRNA
Gene expression levels in SubtiExpress: yjdI
MW, pI	17 kDa, 8.755
Gene length, protein length	477 bp, 159 aa
Immediate neighbours	yjdH, yjzH
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

translation

The gene

Basic information

• Locus tag: BSU12060

Database entries

• DBTBS entry: no entry

• SubtiList entry: [1]

Additional information

E. coli homolog: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family:

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactors:

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• Structure:

• UniProt: O31650

• KEGG entry: [3]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: yjdI PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Mom Das, Oscar Vargas-Rodriguez, Yuki Goto, Hiroaki Suga, Karin Musier-Forsyth
Distinct tRNA recognition strategies used by a homologous family of editing domains prevent mistranslation.
Nucleic Acids Res: 2014, 42(6);3943-53
[PubMed:24371276] [WorldCat.org] [DOI] (I p)

Songon An, Karin Musier-Forsyth
Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex.
J Biol Chem: 2005, 280(41);34465-72
[PubMed:16087664] [WorldCat.org] [DOI] (P p)

Benfang Ruan, Dieter Söll
The bacterial YbaK protein is a Cys-tRNAPro and Cys-tRNA Cys deacylase.
J Biol Chem: 2005, 280(27);25887-91
[PubMed:15886196] [WorldCat.org] [DOI] (P p)

Fai-Chu Wong, Penny J Beuning, Carmen Silvers, Karin Musier-Forsyth
An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing.
J Biol Chem: 2003, 278(52);52857-64
[PubMed:14530268] [WorldCat.org] [DOI] (P p)