YkkC

• Description: similar to molecular chaperone
  
  

Gene name	ykkC
Synonyms
Essential	no
Product	unknown
Function	unknown
Gene expression levels in SubtiExpress: ykkC
MW, pI	11 kDa, 5.364
Gene length, protein length	336 bp, 112 aa
Immediate neighbours	ykkB, ykkD
Sequences	Protein DNA Advanced_DNA
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

chaperones/ protein folding, membrane proteins

The gene

Basic information

• Locus tag: BSU13090

Database entries

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family: View classification (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:
  • cell membrane (according to Swiss-Prot)

Database entries

• Structure:

• UniProt: P49856

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon: ykkC-ykkD PubMed

• Expression browser: ykkC PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:
  • expression of the ykkC-ykkD operon may be controlled by the presumptive ykkC/yxkD riboswitch PubMed

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Michelle M Meyer, Ming C Hammond, Yasmmyn Salinas, Adam Roth, Narasimhan Sudarsan, Ronald R Breaker
Challenges of ligand identification for riboswitch candidates.
RNA Biol: 2011, 8(1);5-10
[PubMed:21317561] [WorldCat.org] [DOI] (I p)

Jeffrey E Barrick, Keith A Corbino, Wade C Winkler, Ali Nahvi, Maumita Mandal, Jennifer Collins, Mark Lee, Adam Roth, Narasimhan Sudarsan, Inbal Jona, J Kenneth Wickiser, Ronald R Breaker
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Proc Natl Acad Sci U S A: 2004, 101(17);6421-6
[PubMed:15096624] [WorldCat.org] [DOI] (P p)

D L Jack, M L Storms, J H Tchieu, I T Paulsen, M H Saier
A broad-specificity multidrug efflux pump requiring a pair of homologous SMR-type proteins.
J Bacteriol: 2000, 182(8);2311-3
[PubMed:10735877] [WorldCat.org] [DOI] (P p)