YpsC

• Description: similar to SAM-dependent 23S rRNA methyltransferase
  
  

Gene name	ypsC
Synonyms
Essential	no
Product	23S rRNA methyltransferase
Function	rRNA modification
Gene expression levels in SubtiExpress: ypsC
MW, pI	43 kDa, 8.011
Gene length, protein length	1155 bp, 385 aa
Immediate neighbours	ypzG, rnpB
Get the DNA and protein sequences (Barbe et al., 2009)
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

translation

The gene

Basic information

• Locus tag: BSU22170

Database entries

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family:

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:
  • YpsC interacts with the RNA polymerase PubMed

• Localization:

Database entries

• Structure:

• UniProt: P50840

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: ypsC PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Additional publications: PubMed

Dmitry V Lesnyak, Petr V Sergiev, Alexey A Bogdanov, Olga A Dontsova
Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.
J Mol Biol: 2006, 364(1);20-5
[PubMed:17010378] [WorldCat.org] [DOI] (P p)