YteR

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  • Description: galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by YesX

Gene name yteR
Synonyms
Essential no
Product galacturonyl hydrolase, catalyses intracellular degradation
of disaccharides generated by YesX
Function intracellular degradation of disaccharides generated by YesX
Gene expression levels in SubtiExpress: yteR
MW, pI 42 kDa, 5.87
Gene length, protein length 1119 bp, 373 aa
Immediate neighbours yteS, yteP
Sequences Protein DNA DNA_with_flanks
Genetic context
YteR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YteR expression.png
























Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU30120

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: glycosyl hydrolase 105 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: cytoplasm (according to Swiss-Prot)

Database entries

  • Structure: 2GH4, 2D8L (complex with D-GlcA-Gal-nc)
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation: induced by rhamnogalacturonan PubMed
  • Regulatory mechanism:
  • Additional information: the mRNA is very stable (half-life > 15 min) PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Akihito Ochiai, Takafumi Itoh, Akiko Kawamata, Wataru Hashimoto, Kousaku Murata
Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization.
Appl Environ Microbiol: 2007, 73(12);3803-13
[PubMed:17449691] [WorldCat.org] [DOI] (P p)

Takafumi Itoh, Akihito Ochiai, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate.
Biochem Biophys Res Commun: 2006, 347(4);1021-9
[PubMed:16870154] [WorldCat.org] [DOI] (P p)

Takafumi Itoh, Akihito Ochiai, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide.
J Mol Biol: 2006, 360(3);573-85
[PubMed:16781735] [WorldCat.org] [DOI] (P p)

G Hambraeus, C von Wachenfeldt, L Hederstedt
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs.
Mol Genet Genomics: 2003, 269(5);706-14
[PubMed:12884008] [WorldCat.org] [DOI] (P p)