YjdI

• Description: similiar to Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase
  
  

Gene name	yjdI
Synonyms
Essential	no
Product	Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase
Function	maturation of tRNA
Gene expression levels in SubtiExpress: yjdI
MW, pI	17 kDa, 8.755
Gene length, protein length	477 bp, 159 aa
Immediate neighbours	yjdH, yjdJ
Get the DNA and protein sequences (Barbe et al., 2009)
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

translation

The gene

Basic information

• Locus tag: BSU12060

Database entries

• DBTBS entry: no entry

• SubtiList entry: [1]

Additional information

E. coli homolog: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family:

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• Structure:

• UniProt: O31650

• KEGG entry: [3]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: yjdI PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Songon An, Karin Musier-Forsyth
Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex.
J Biol Chem: 2005, 280(41);34465-72
[PubMed:16087664] [WorldCat.org] [DOI] (P p)

Benfang Ruan, Dieter Söll
The bacterial YbaK protein is a Cys-tRNAPro and Cys-tRNA Cys deacylase.
J Biol Chem: 2005, 280(27);25887-91
[PubMed:15886196] [WorldCat.org] [DOI] (P p)

Fai-Chu Wong, Penny J Beuning, Carmen Silvers, Karin Musier-Forsyth
An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing.
J Biol Chem: 2003, 278(52);52857-64
[PubMed:14530268] [WorldCat.org] [DOI] (P p)