YwdI

• Description: unknown
  
  

Gene name	ywdI
Synonyms	ipa-59d
Essential	no
Product	unknown
Function	unknown
Gene expression levels in SubtiExpress: ywdI
MW, pI	11 kDa, 4.869
Gene length, protein length	315 bp, 105 aa
Immediate neighbours	ywdJ, ywdH
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

TnrA regulon

The gene

Basic information

• Locus tag: BSU37950

Database entries

• BsubCyc: BSU37950

• DBTBS entry: [1]

• SubtiList entry: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family:

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• BsubCyc: BSU37950

• Structure:

• UniProt: P39617

• KEGG entry: [3]

• E.C. number:

Expression and regulation

• Operon: ywdI-ywdJ-ywdK PubMed

• Expression browser: ywdI PubMed

• Sigma factor:

• Regulation:
  • repressed in the absence of good nitrogen sources (glutamine or ammonium) (TnrA) PubMed

• Regulatory mechanism:
  • TnrA: transcription repression PubMed

• Additional information:
  • number of protein molecules per cell (minimal medium with glucose and ammonium): 572 PubMed
  • number of protein molecules per cell (complex medium with amino acids, without glucose): 1509 PubMed

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Ken-ichi Yoshida, Hirotake Yamaguchi, Masaki Kinehara, Yo-hei Ohki, Yoshiko Nakaura, Yasutaro Fujita
Identification of additional TnrA-regulated genes of Bacillus subtilis associated with a TnrA box.
Mol Microbiol: 2003, 49(1);157-65
[PubMed:12823818] [WorldCat.org] [DOI] (P p)