YdaF

• Description: similar to acetyltransferase
  
  

Gene name	ydaF
Synonyms
Essential	no
Product	unknown
Function	unknown
Gene expression levels in SubtiExpress: ydaF
MW, pI	20 kDa, 5.564
Gene length, protein length	549 bp, 183 aa
Immediate neighbours	ydaE, ydaG
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

general stress proteins (controlled by SigB), poorly characterized/ putative enzymes

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

• Locus tag: BSU04210

Database entries

• BsubCyc: BSU04210

• DBTBS entry: [1]

• SubtiList entry: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family: N-acetyltransferase domain (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• BsubCyc: BSU04210

• Structure: 1NSL PubMed

• UniProt: P96579

• KEGG entry: [3]

• E.C. number:

Expression and regulation

• Operon: ydaD-ydaE-ydaF-ydaG PubMed

• Expression browser: ydaF PubMed

• Sigma factor: SigB PubMed

• Regulation:
  • induced under stress conditions (SigB) PubMed

• Regulatory mechanism:

• Additional information:
  • number of protein molecules per cell (minimal medium with glucose and ammonium): 126 PubMed

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)

Joseph S Brunzelle, Ruiying Wu, Sergey V Korolev, Frank R Collart, Andrzej Joachimiak, Wayne F Anderson
Crystal structure of Bacillus subtilis YdaF protein: a putative ribosomal N-acetyltransferase.
Proteins: 2004, 57(4);850-3
[PubMed:15468321] [WorldCat.org] [DOI] (I p)

Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166] [WorldCat.org] [DOI] (P p)