Talk:SubtiPathways

Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!

General comments about all diagrams

• There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.
• Comments in brackets have been changed in the original files, but have not been uploaded yet.

Carbon metabolism

Central carbon metabolism

• (Please check whether the "y" genes in the diagrams have already new names. Jörg)

Utilization of different carbon sources

• write comments here

Nitrogen and amino acid metabolism

Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)

• write comments here

Alanine, glycine, serine

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Aspartate, asparagine

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Cysteine, methionine

• Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)
• Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)

Histidine

• write comments here

Isoleucine, valine, leucine

• Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)

Lysine, threonine

• write comments here

Phenylalanine, tyrosine, tryptophan

• Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?

Proline

• write comments here

Lipid metabolism

Fatty acid and phospholipid biosynthesis

• The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?
• The same applies for phosphatidylglycerol, L-serine, and others.

Nucleotides

Gene regulation of nucleotides

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Nucleosides catabolism

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Purine metabolism

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Purine catabolism

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Purine salvage pathways

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Pyrimidine metabolism

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Metabolism of cofactors

CoA synthesis

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Folate biosynthesis

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Menaquinone

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Riboflavin and FAD synthesis

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Thiamin synthesis

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Other pathways

Cellwall

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Stress response

• (PurP muss PurS sein)
• (SpoVt muss SpoVT sein)
• (sigB groß)
• (sigF groß)
• (glutamate (bei Prolinsynthese) lila)
• (OpuAABCD muss OpuB(ABCD) sein)

Sulfate assimilation

• write comments here

tRNA charging

• Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg