Papersammlung

Regulation

Jie Yuan, Christopher D Doucette, William U Fowler, Xiao-Jiang Feng, Matthew Piazza, Herschel A Rabitz, Ned S Wingreen, Joshua D Rabinowitz
Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli.
Mol Syst Biol: 2009, 5;302
[PubMed:19690571] [WorldCat.org] [DOI] (I p)

Fabian M Commichau, Katrin Gunka, Jens J Landmann, Jörg Stülke
Glutamate metabolism in Bacillus subtilis: gene expression and enzyme activities evolved to avoid futile cycles and to allow rapid responses to perturbations of the system.
J Bacteriol: 2008, 190(10);3557-64
[PubMed:18326565] [WorldCat.org] [DOI] (I p)

Susan H Fisher, Lewis V Wray
Bacillus subtilis glutamine synthetase regulates its own synthesis by acting as a chaperone to stabilize GlnR-DNA complexes.
Proc Natl Acad Sci U S A: 2008, 105(3);1014-9
[PubMed:18195355] [WorldCat.org] [DOI] (I p)

Fabian M Commichau, Christina Herzberg, Philipp Tripal, Oliver Valerius, Jörg Stülke
A regulatory protein-protein interaction governs glutamate biosynthesis in Bacillus subtilis: the glutamate dehydrogenase RocG moonlights in controlling the transcription factor GltC.
Mol Microbiol: 2007, 65(3);642-54
[PubMed:17608797] [WorldCat.org] [DOI] (P p)

Dalai Yan
Protection of the glutamate pool concentration in enteric bacteria.
Proc Natl Acad Sci U S A: 2007, 104(22);9475-80
[PubMed:17517610] [WorldCat.org] [DOI] (P p)

Systematik

Norman R Pace
Mapping the tree of life: progress and prospects.
Microbiol Mol Biol Rev: 2009, 73(4);565-76
[PubMed:19946133] [WorldCat.org] [DOI] (I p)

Jeffrey E Barrick, Dong Su Yu, Sung Ho Yoon, Haeyoung Jeong, Tae Kwang Oh, Dominique Schneider, Richard E Lenski, Jihyun F Kim
Genome evolution and adaptation in a long-term experiment with Escherichia coli.
Nature: 2009, 461(7268);1243-7
[PubMed:19838166] [WorldCat.org] [DOI] (I p)

J E Barrick, R E Lenski
Genome-wide mutational diversity in an evolving population of Escherichia coli.
Cold Spring Harb Symp Quant Biol: 2009, 74;119-29
[PubMed:19776167] [WorldCat.org] [DOI] (I p)

James A Lake
Evidence for an early prokaryotic endosymbiosis.
Nature: 2009, 460(7258);967-71
[PubMed:19693078] [WorldCat.org] [DOI] (I p)

Dan I Andersson, Diarmaid Hughes
Gene amplification and adaptive evolution in bacteria.
Annu Rev Genet: 2009, 43;167-95
[PubMed:19686082] [WorldCat.org] [DOI] (I p)

Carl Zimmer
Origins. On the origin of eukaryotes.
Science: 2009, 325(5941);666-8
[PubMed:19661396] [WorldCat.org] [DOI] (I p)

Fumito Maruyama, Mitsuhiko Kobata, Ken Kurokawa, Keishin Nishida, Atsuo Sakurai, Kazuhiko Nakano, Ryota Nomura, Shigetada Kawabata, Takashi Ooshima, Kenta Nakai, Masahira Hattori, Shigeyuki Hamada, Ichiro Nakagawa
Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content.
BMC Genomics: 2009, 10;358
[PubMed:19656368] [WorldCat.org] [DOI] (I e)

Valérie Barbe, Stéphane Cruveiller, Frank Kunst, Patricia Lenoble, Guillaume Meurice, Agnieszka Sekowska, David Vallenet, Tingzhang Wang, Ivan Moszer, Claudine Médigue, Antoine Danchin
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.
Microbiology (Reading): 2009, 155(Pt 6);1758-1775
[PubMed:19383706] [WorldCat.org] [DOI] (P p)

Howard Ochman
Radical views of the tree of life.
Environ Microbiol: 2009, 11(4);731-2
[PubMed:19236444] [WorldCat.org] [DOI] (I p)

Eugene V Koonin
Darwinian evolution in the light of genomics.
Nucleic Acids Res: 2009, 37(4);1011-34
[PubMed:19213802] [WorldCat.org] [DOI] (I p)

Christophe Fraser, Eric J Alm, Martin F Polz, Brian G Spratt, William P Hanage
The bacterial species challenge: making sense of genetic and ecological diversity.
Science: 2009, 323(5915);741-6
[PubMed:19197054] [WorldCat.org] [DOI] (I p)

Cymon J Cox, Peter G Foster, Robert P Hirt, Simon R Harris, T Martin Embley
The archaebacterial origin of eukaryotes.
Proc Natl Acad Sci U S A: 2008, 105(51);20356-61
[PubMed:19073919] [WorldCat.org] [DOI] (I p)

Eugene V Koonin
The Biological Big Bang model for the major transitions in evolution.
Biol Direct: 2007, 2;21
[PubMed:17708768] [WorldCat.org] [DOI] (I e)

Adrian Reyes-Prieto, Andreas P M Weber, Debashish Bhattacharya
The origin and establishment of the plastid in algae and plants.
Annu Rev Genet: 2007, 41;147-68
[PubMed:17600460] [WorldCat.org] [DOI] (P p)

Antoine Danchin, Gang Fang, Stanislas Noria
The extant core bacterial proteome is an archive of the origin of life.
Proteomics: 2007, 7(6);875-89
[PubMed:17370266] [WorldCat.org] [DOI] (P p)

Francesca D Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J Creevey, Berend Snel, Peer Bork
Toward automatic reconstruction of a highly resolved tree of life.
Science: 2006, 311(5765);1283-7
[PubMed:16513982] [WorldCat.org] [DOI] (I p)

J Peter Gogarten, Jeffrey P Townsend
Horizontal gene transfer, genome innovation and evolution.
Nat Rev Microbiol: 2005, 3(9);679-87
[PubMed:16138096] [WorldCat.org] [DOI] (P p)

Anne B Simonson, Jacqueline A Servin, Ryan G Skophammer, Craig W Herbold, Maria C Rivera, James A Lake
Decoding the genomic tree of life.
Proc Natl Acad Sci U S A: 2005, 102 Suppl 1(Suppl 1);6608-13
[PubMed:15851667] [WorldCat.org] [DOI] (P p)

Maria C Rivera, James A Lake
The ring of life provides evidence for a genome fusion origin of eukaryotes.
Nature: 2004, 431(7005);152-5
[PubMed:15356622] [WorldCat.org] [DOI] (I p)

Eugene V Koonin
Comparative genomics, minimal gene-sets and the last universal common ancestor.
Nat Rev Microbiol: 2003, 1(2);127-36
[PubMed:15035042] [WorldCat.org] [DOI] (P p)