Difference between revisions of "SubtiPathways"
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[[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways <br/>graphical notation: click to enlarge''']] | [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways <br/>graphical notation: click to enlarge''']] | ||
| − | <big>'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation)</big> | + | <big>'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a colour code for key metabolites (see the legend on the right side).<br/><br/>It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to ''Subti''Wiki and PubChem, respectively. There is a short description for each protein, too.</big> |
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Revision as of 15:31, 17 June 2009
SubtiPathways is a model of B. subtilis metabolism and regulation in SBML/SBGN (Systems Biology Markup Language/ Graphical Notation). There is a colour code for key metabolites (see the legend on the right side).
It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to SubtiWiki and PubChem, respectively. There is a short description for each protein, too.
Carbon metabolism
Central carbon metabolism
Utilization of different carbon sources
Cell wall
CoA synthesis
Folate biosynthesis
Menaquinone
Nitrogen and amino acid metabolism
Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)
Alanine, glycine, serine
Aspartate, asparagine
Cysteine, methionine
Histidine
Isoleucine, valine, leucine
Lysine, threonine
Phenylalanine, tyrosine, tryptophan
Proline
Nucleotides
Gene regulation of nucleotide metabolism
Nucleoside catabolism
Purine biosynthesis
Purine catabolism
Purine salvage pathways
Pyrimidine metabolism
Stress responses
Sulfate assimilation
