Difference between revisions of "GanB"

From SubtiWiki
Jump to: navigation, search
Line 35: Line 35:
 
=== Basic information ===
 
=== Basic information ===
  
* '''Locus tag:'''
+
* '''Locus tag:''' BSU34120
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
Line 80: Line 80:
 
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O07013 O07013]
 
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O07013 O07013]
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU34120 BSU34120]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU34120]
  
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.2.1.89 3.2.1.89]
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.2.1.89 3.2.1.89]

Revision as of 11:07, 3 June 2009

  • Description: similar to arabinogalactan endo-1,4-beta-galactosidase

Gene name yvfO
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 47 kDa, 8.243
Gene length, protein length 1287 bp, 429 aa
Immediate neighbours rsbP, lacA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YvfO context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU34120

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Endohydrolysis of (1->4)-beta-D-galactosidic linkages in arabinogalactans (according to Swiss-Prot)
  • Protein family: glycosyl hydrolase 53 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 2J74 (B. licheniformis)
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed