Difference between revisions of "Sandbox"

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* '''Description:''' replicative DNA helicase <br/><br/>
+
* '''Description:''' unknown <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
||-
+
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''dnaC''
+
|''yyaB''
||-
+
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
||-
+
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
+
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
||-
+
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || replicative DNA helicase
+
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
||-
+
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || DNA replication
+
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
||-
+
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 50 kDa, 4.548  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 10.415  
||-
+
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1362 bp, 454 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 438 bp, 146 aa  
||-
+
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yycE]]'', ''[[yycD]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[soj]]'', ''[[noc]]''
||-
+
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
||-
+
|-
|-||-
+
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:dnaC_context.gif]]
+
|-
 +
|colspan="2" | '''Genetic context''' <br/> [[Image:yyaB_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
||-
+
|-
 
|}
 
|}
  
 
__TOC__
 
__TOC__
  
<br/><br/><br/><br/>
+
<br/><br/>
  
 
=The gene=
 
=The gene=
Line 39: Line 40:
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
 
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
 
  
 
=== Database entries ===
 
=== Database entries ===
  
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dnaC.html]
+
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yyaB.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10004]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10056]
  
 
=== Additional information===
 
=== Additional information===
Line 73: Line 72:
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:''' [[DnaI]]|-[[DnaC]] [http://www.ncbi.nlm.nih.gov/sites/entrez/10844689 PubMed]
+
* '''Interactions:'''
  
* '''Localization:''' Cytoplasm (Homogeneous) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
+
* '''Localization:'''
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
* '''KEGG entry:''' [http://www.genome.jp/dbget|-bin/www_bget?bsu+BSU40440]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU40980]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''
Line 111: Line 110:
 
* '''GFP fusion:'''
 
* '''GFP fusion:'''
  
* '''two|-hybrid system:'''  
+
* '''two-hybrid system:'''  
  
 
* '''Antibody:'''
 
* '''Antibody:'''
Line 121: Line 120:
 
=References=
 
=References=
  
# Meile et al. (2006) Systematic localisation of proteins fused to the green fluorescent protein in ''Bacillus subtilis'': identification of new proteins at the DNA replication factory ''Proteomics'' '''6:''' 2135|-2146. [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
+
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
# Imai et al. (2000) Subcellular localization of Dna|-initiation proteins of ''Bacillus subtilis'': evidence that chromosome replication begins at either edge of the nucleoids. ''Mol. Microbiol.'' '''36:''' 1037|-1048. [http://www.ncbi.nlm.nih.gov/sites/entrez/10844689 PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page|-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 

Revision as of 13:29, 15 April 2009

  • Description: unknown

Gene name yyaB
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 16 kDa, 10.415
Gene length, protein length 438 bp, 146 aa
Immediate neighbours soj, noc
Hier soll was neues rein
Genetic context
YyaB context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed