Difference between revisions of "Sandbox"

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−
* '''Description:''' 16S rRNA <br/><br/>
+
* '''Description:''' tRNA-Ala
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
−
|''rrnB-16S''
+
|''trnSL-Ala1''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-16S
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|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Ala
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 1550
+
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 76
 
|-|-
 
|-|-
 
    
 
    
−
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnB-23S]]'', ''[[thiT]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yubC]]'', ''[[yubB]]''
 
|-
 
|-
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnB-16S_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnSL-Ala1_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 
|style="background:#FAF8CC;" align="center"|'''  '''
 
|style="background:#FAF8CC;" align="center"|'''  '''
 
|-
 
|-
−
|colspan="2" | '''Genetic context''' <br/> [[Image:rrnB-16S_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:trnSL-Ala1_context.gif]]
 
|-
 
|-
 
|}
 
|}
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=== Database entries ===
 
=== Database entries ===
  
−
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnB.html]
+
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnSL-Ala1.html]
  
−
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00071]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00123]
 
   
 
   
−
* '''Structure:'''
+
* '''Structure:'''  
  
 
=== Additional information===
 
=== Additional information===
 +
 +
 +
 
  
 
=Expression and regulation=
 
=Expression and regulation=
  
−
* '''Operon:''' ''rrnB'' (''[[trnB-Glu]]- [[trnB-Ser2]]- [[trnB-Asn]]- [[trnB-Ile2]]- [[trnB-Gly2]]- [[trnB-Phe]]- [[trnB-His]]- [[trnB-Asp]]- [[trnB-Met2]]- [[trnB-Ser1]]- [[trnB-Met3]]- [[trnB-Met1]]- [[trnB-Ala]]- [[trnB-Pro]]- [[trnB-Arg]]- [[trnB-Gly1]]- [[trnB-Leu2]]- [[trnB-Leu1]]- [[trnB-Lys]]- [[trnB-Thr]]- [[trnB-Val]]- [[rrnB-5S]]- [[rrnB-23S]]- [[rrnB-16S]]'')  [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed]
+
* '''Operon:'''  
  
 
* '''Sigma factor:'''  
 
* '''Sigma factor:'''  
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* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
  
−
* '''Additional information:'''
+
* '''Additional information:'''  
  
 
=Biological materials =
 
=Biological materials =
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* '''GFP fusion:'''
 
* '''GFP fusion:'''
  
−
=Labs working on this gene/RNA=
+
* '''two-hybrid system:'''
 +
 
 +
* '''Antibody:'''
 +
 
 +
=Labs working on this gene/protein=
  
 
=Your additional remarks=
 
=Your additional remarks=
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=References=
 
=References=
  
−
# Green CJ, Stewart GC, Hollis MA, Vold BS, Bott KF (1985) Nucleotide sequence of the ''Bacillus subtilis'' ribosomal RNA operon, ''rrnB''.''Nucl. Acids Res.'' '''37:''' 261-266. [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed]
 
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 15:52, 4 March 2009

  • Description: tRNA-Ala
Gene name trnSL-Ala1
Synonyms
Essential no
Product transfer RNA-Ala
Function translation
Gene length 76
Immediate neighbours yubC, yubB
Gene sequence (+200bp)
Genetic context
TrnSL-Ala1 context.gif








The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]
  • Structure:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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