Difference between revisions of "Sandbox"
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| − | * '''Description:''' | + | * '''Description:''' 16S rRNA <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |''rrnB- | + | |''rrnB-16S'' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA- | + | |style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-16S |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || translation | |style="background:#ABCDEF;" align="center"|'''Function''' || translation | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length''' || | + | |style="background:#ABCDEF;" align="center"| '''Gene length''' || 1550 |
|-|- | |-|- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnB- | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rrnB-23S]]'', ''[[thiT]]'' |
|- | |- | ||
| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnB- | + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnB-16S_nucleotide.txt Gene sequence (+200bp) ]''' |
|style="background:#FAF8CC;" align="center"|''' ''' | |style="background:#FAF8CC;" align="center"|''' ''' | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image:rrnB- | + | |colspan="2" | '''Genetic context''' <br/> [[Image:rrnB-16S_context.gif]] |
|- | |- | ||
|} | |} | ||
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnB.html] | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnB.html] | ||
| − | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+ | + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00071] |
* '''Structure:''' | * '''Structure:''' | ||
Revision as of 15:52, 4 March 2009
- Description: 16S rRNA
| Gene name | rrnB-16S |
| Synonyms | |
| Essential | no |
| Product | ribosomal RNA-16S |
| Function | translation |
| Gene length | 1550 |
| Immediate neighbours | rrnB-23S, thiT |
| Gene sequence (+200bp) | |
Genetic context 
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
- Structure:
Additional information
Expression and regulation
- Operon: rrnB (trnB-Glu- trnB-Ser2- trnB-Asn- trnB-Ile2- trnB-Gly2- trnB-Phe- trnB-His- trnB-Asp- trnB-Met2- trnB-Ser1- trnB-Met3- trnB-Met1- trnB-Ala- trnB-Pro- trnB-Arg- trnB-Gly1- trnB-Leu2- trnB-Leu1- trnB-Lys- trnB-Thr- trnB-Val- rrnB-5S- rrnB-23S- rrnB-16S) PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
