Difference between revisions of "Sandbox"
| Line 1: | Line 1: | ||
| − | * '''Description:''' tRNA- | + | * '''Description:''' tRNA-Glu |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''trnB-Glu'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''trnE '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA- | + | |style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Glu |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || translation | |style="background:#ABCDEF;" align="center"|'''Function''' || translation | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length''' || | + | |style="background:#ABCDEF;" align="center"| '''Gene length''' || 75 |
|-|- | |-|- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[glgB]]'', ''[[trnB-Ser2]]'' |
|- | |- | ||
| − | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ | + | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnB-Glu_nucleotide.txt Gene sequence (+200bp) ]''' |
|style="background:#FAF8CC;" align="center"|''' ''' | |style="background:#FAF8CC;" align="center"|''' ''' | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |colspan="2" | '''Genetic context''' <br/> [[Image:trnB-Glu_context.gif]] |
|- | |- | ||
|} | |} | ||
| Line 41: | Line 41: | ||
=== Database entries === | === Database entries === | ||
| − | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ | + | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnB.html] |
| − | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+ | + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00094] |
| − | * '''Structure:''' | + | * '''Structure:''' |
=== Additional information=== | === Additional information=== | ||
| Line 54: | Line 54: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''rrnB'' (''[[trnB-Glu]]- [[trnB-Ser2]]- [[trnB-Asn]]- [[trnB-Ile2]]- [[trnB-Gly2]]- [[trnB-Phe]]- [[trnB-His]]- [[trnB-Asp]]- [[trnB-Met2]]- [[trnB-Ser1]]- [[trnB-Met3]]- [[trnB-Met1]]- [[trnB-Ala]]- [[trnB-Pro]]- [[trnB-Arg]]- [[trnB-Gly1]]- [[trnB-Leu2]]- [[trnB-Leu1]]- [[trnB-Lys]]- [[trnB-Thr]]- [[trnB-Val]]- [[rrnB-5S]]- [[rrnB-23S]]- [[rrnB-16S]]'') [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed] |
* '''Sigma factor:''' | * '''Sigma factor:''' | ||
| Line 62: | Line 62: | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
| Line 84: | Line 84: | ||
=References= | =References= | ||
| + | # Green CJ, Stewart GC, Hollis MA, Vold BS, Bott KF (1985) Nucleotide sequence of the ''Bacillus subtilis'' ribosomal RNA operon, ''rrnB''.''Nucl. Acids Res.'' '''37:''' 261-266. [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed] | ||
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed] | # Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed] | ||
Revision as of 15:50, 4 March 2009
- Description: tRNA-Glu
| Gene name | trnB-Glu |
| Synonyms | trnE |
| Essential | no |
| Product | transfer RNA-Glu |
| Function | translation |
| Gene length | 75 |
| Immediate neighbours | glgB, trnB-Ser2 |
| Gene sequence (+200bp) | |
Genetic context 
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
- Structure:
Additional information
Expression and regulation
- Operon: rrnB (trnB-Glu- trnB-Ser2- trnB-Asn- trnB-Ile2- trnB-Gly2- trnB-Phe- trnB-His- trnB-Asp- trnB-Met2- trnB-Ser1- trnB-Met3- trnB-Met1- trnB-Ala- trnB-Pro- trnB-Arg- trnB-Gly1- trnB-Leu2- trnB-Leu1- trnB-Lys- trnB-Thr- trnB-Val- rrnB-5S- rrnB-23S- rrnB-16S) PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
