Difference between revisions of "CsfB"

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m (Jstuelk moved page Gin to CsfB over redirect: 25835496)
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|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''gin''
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|''csfB''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''csfB, yaaM ''
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''gin, yaaM ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigG]] and [[SigE]] activity
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigG]] and [[SigE]] activity
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00240 gin]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00240 csfB]
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CsfB Gin]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CsfB CsfB]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 7.671   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 7.671   
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=== Additional information===
 
=== Additional information===
 
 
 
  
 
=The protein=
 
=The protein=
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* '''[[SubtInteract|Interactions]]:'''
 
* '''[[SubtInteract|Interactions]]:'''
** [[Gin]]-[[SigG]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19497328 PubMed]
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** [[CsfB]]-[[SigG]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19497328 PubMed]
  
 
* '''[[Localization]]:''' forespore
 
* '''[[Localization]]:''' forespore
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''gin''
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* '''Operon:''' ''csfB''
  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=csfB_35531_35725_1 gin] {{PubMed|22383849}}
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=csfB_35531_35725_1 csfB] {{PubMed|22383849}}
  
 
* '''Sigma factor:''' [[SigF]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16497325 PubMed]
 
* '''Sigma factor:''' [[SigF]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16497325 PubMed]
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=References=
 
=References=
'''Additional publications:''' {{PubMed|20802044,21935351}}
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<pubmed>7592342,19497328,8759874,18208527 16497325 17921305, 20802044,21935351 25835496</pubmed>
<pubmed>7592342,19497328,8759874,18208527 16497325 17921305, </pubmed>
 
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 13:07, 6 April 2015

  • Description: forespore-specific protein, inhibitor of SigG and of SigE

Gene name csfB
Synonyms gin, yaaM
Essential no
Product inhibitor of SigG and SigE
Function control of SigG and SigE activity
Gene expression levels in SubtiExpress: csfB
Interactions involving this protein in SubtInteract: CsfB
MW, pI 7 kDa, 7.671
Gene length, protein length 192 bp, 64 aa
Immediate neighbours rrnA-5S, xpaC
Sequences Protein DNA DNA_with_flanks
Genetic context
CsfB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
Gin expression.png















Categories containing this gene/protein

sigma factors and their control, sporulation proteins

This gene is a member of the following regulons

SigF regulon

The gene

Basic information

  • Locus tag: BSU00240

Phenotypes of a mutant

premature activation of SigG PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: csfB
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References