Difference between revisions of "YocR"
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=== Additional information=== | === Additional information=== | ||
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* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU19340&redirect=T BSU19340] | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU19340&redirect=T BSU19340] | ||
| − | * '''Structure:''' | + | * '''Structure:''' [http://pdb.org/pdb/explore/explore.do?structureId=4US4 4US4] (the protein from ''B. halodurans'', 45% identity, 77% similarity) {{PubMed|25282149}} |
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34383 O34383] | * '''UniProt:''' [http://www.uniprot.org/uniprot/O34383 O34383] | ||
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=References= | =References= | ||
| − | <pubmed>18763711, </pubmed> | + | <pubmed>18763711, 25282149</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 18:06, 16 February 2015
- Description: similar to sodium-dependent transporter
| Gene name | yocR |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: yocR | |
| MW, pI | 48 kDa, 9.592 |
| Gene length, protein length | 1335 bp, 445 aa |
| Immediate neighbours | sodF, yocS |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transporters/ other, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU19340
Phenotypes of a mutant
Database entries
- BsubCyc: BSU19340
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: iron/manganese superoxide dismutase family (according to Swiss-Prot)
- Paralogous protein(s): YhdH
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- membrane associated PubMed
Database entries
- BsubCyc: BSU19340
- UniProt: O34383
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Lina Malinauskaite, Matthias Quick, Linda Reinhard, Joseph A Lyons, Hideaki Yano, Jonathan A Javitch, Poul Nissen
A mechanism for intracellular release of Na+ by neurotransmitter/sodium symporters.
Nat Struct Mol Biol: 2014, 21(11);1006-12
[PubMed:25282149]
[WorldCat.org]
[DOI]
(I p)
Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711]
[WorldCat.org]
[DOI]
(I p)
