RhiL

• Description: ABC transporter (sugar-binding protein) for rhamnose oligosaccharides
  
  

Gene name	rhiL
Synonyms	yesO
Essential	no
Product	rhamnose oligosaccharide ABC transporter
Function	uptake of rhamnose oligosaccharides
Gene expression levels in SubtiExpress: rhiL
Interactions involving this protein in SubtInteract: RhiL
MW, pI	46 kDa, 4.992
Gene length, protein length	1236 bp, 412 aa
Immediate neighbours	yesN, rhiF
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

ABC transporters, utilization of specific carbon sources, membrane proteins

The gene

Basic information

• Locus tag: BSU06970

Database entries

• BsubCyc: BSU06970

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family: bacterial solute-binding protein 1 family (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactors:

• Effectors of protein activity:

• Interactions:
  • (RhiL-RhiF)-RhiG PubMed

• Localization:
  • associated to the membrane (via RhiF-RhiG) PubMed

Database entries

• BsubCyc: BSU06970

• Structure:

• UniProt: O31518

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: rhiL PubMed

• Sigma factor:

• Regulation:
  • induced by pectin PubMed

• Regulatory mechanism:

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Irina A Rodionova, Xiaoqing Li, Vera Thiel, Sergey Stolyar, Krista Stanton, James K Fredrickson, Donald A Bryant, Andrei L Osterman, Aaron A Best, Dmitry A Rodionov
Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria.
Front Microbiol: 2013, 4;407
[PubMed:24391637] [WorldCat.org] [DOI] (P e)

Akihito Ochiai, Takafumi Itoh, Akiko Kawamata, Wataru Hashimoto, Kousaku Murata
Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization.
Appl Environ Microbiol: 2007, 73(12);3803-13
[PubMed:17449691] [WorldCat.org] [DOI] (P p)

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)