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Welcome to SubtiWiki! - Bacillus subtilis annotation the "wiki" way!

Contact: General Microbiology, University of Göttingen, send mail

Upcoming events:

• PTS 50 - The PTS celebrates 50 years of transport and regulation, organized by Josef Deutscher, Milton Saier and Jörg Stülke will take place from September 07 to 08 in Göttingen, Germany. website, Registration form, contact
• The 1st International Conference on Post-Translational Modifications in Bacteria, organized by Ivan Mijakovic, Christophe Grangeasse, Alan Kent Nielsen and Jörg Stülke will take place from September 09 to 10 in Göttingen, Germany. website, Registration form, contact
• Past conferences

New: Subtiwiki is now on Facebook - please give it a +1!

Now online: A new description of SubtiWiki and its acompanying modules in the 2014 Database issue of Nucleic Acids Research

Raphael H Michna, Fabian M Commichau, Dominik Tödter, Christopher P Zschiedrich, Jörg Stülke
SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information.
Nucleic Acids Res: 2014, 42(Database issue);D692-8
[PubMed:24178028] [WorldCat.org] [DOI] (I p)

Paper of the month: May 2014

• The knowledge about absolute numbers of molecules of a given protein is often important, e. g. in the context of systems biology or to evaluate the relevance of experimentally observed protein-protein interactions. Muntel et al. from the lab of Dörte Becher have now determined absolute protein concentrations for about 1,000 cytosolic proteins. The results of this study have been added to the SubtiWiki gene pages (see # Expression and regulation). In this study, flagellin was found to be the most abundant protein of B. subtilis.
• Relevant SubtiWiki pages: Dörte Becher, Michael Hecker, Vincent Fromion, Ulrike Mäder, genome-wide analyses, protein-protein interactions

Jan Muntel, Vincent Fromion, Anne Goelzer, Sandra Maaβ, Ulrike Mäder, Knut Büttner, Michael Hecker, Dörte Becher
Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E)).
Mol Cell Proteomics: 2014, 13(4);1008-19
[PubMed:24696501] [WorldCat.org] [DOI] (I p)

• Previous papers of the month

New procedure for account creation:

• Due to massive spam attacks, we had to change our policy for the creation of accounts. If you want to create an account, just send me a mail. We will create the account for you as quickly as possible, then you can change your password. This does not affect existing accounts, which remain active.
  
• Please remember that all members of the Bacillus community are invited to create accounts and to contribute to SubtiWiki!

News in SubtiWiki:

• April 2013: SubtiWiki uses a new, faster Mediawiki platform! The times for page access are significantly reduced. Enjoy!
• March 2013: updated Excel files that map all genes to categories and regulons as well as the general updated identity mapping of all genes were uploaded.
• October 2012: the essential genes have been categorized
• September 2012: 300 mutant strains available at the BGSC were added to the corresponding gene pages
• August 2012: SubtiExpress, the new compagnon of SubtiWiki devoted to gene expression is online! Try it out!
• April 2012: Links for expression data under 104 different conditions (based on Nicolas et al., 2012) have been added to the expression section of the individual gene pages
• April 2011: SubtInteract, a presentation of protein-protein interactions in B. subtilis, is online!
• December 2010: SubtiCellPublisher allows the conversion of CellDesigner diagrams to navigatable presentations in the style of SubtiPathways

Genes (examples)	Additional pages
spo0A	SubtiPathways
glnA	SubtInteract
rny	SubtiExpress
psdA	Regulons
pckA	methods
dnaA	metabolism
rnpA	categories
sigB	genome-wide analyses
ptkA	list of plasmids
mreC	labs working on Bacillus
ccpA	the people behind SubtiWiki
sr1	template

Publications describing SubtiWiki and SubtiPathways: