Difference between revisions of "QdoR"
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU39990&redirect=T BSU39990] | ||
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxaF.html] | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxaF.html] | ||
| Line 93: | Line 94: | ||
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU39990&redirect=T BSU39990] | ||
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1SGM 1SGM] | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1SGM 1SGM] | ||
Revision as of 15:14, 2 April 2014
- Description: transcriptional regulator (TetR family), control of qdoI-yxaH and lmrA-lmrB
| Gene name | qdoR |
| Synonyms | yxaF |
| Essential | no |
| Product | transcriptional regulator |
| Function | control of quercetin utilization |
| Gene expression levels in SubtiExpress: qdoR | |
| MW, pI | 20 kDa, 6.111 |
| Gene length, protein length | 573 bp, 191 aa |
| Immediate neighbours | qdoI, yxnA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transcription factors and their control, resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)
This gene is a member of the following regulons
The QdoR regulon:
The gene
Basic information
- Locus tag: BSU39990
Phenotypes of a mutant
Database entries
- BsubCyc: BSU39990
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: TetR family
- Paralogous protein(s): LmrA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity: flavonoids such as quercetin act as molecular inducers and result in release from DNA targets PubMed
Database entries
- BsubCyc: BSU39990
- Structure: 1SGM
- UniProt: P42105
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: qdoR PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
- Yasutaro Fujita, University of Fukuyama, Japan
Your additional remarks
References
Reviews
Leslie Cuthbertson, Justin R Nodwell
The TetR family of regulators.
Microbiol Mol Biol Rev: 2013, 77(3);440-75
[PubMed:24006471]
[WorldCat.org]
[DOI]
(I p)
Original publications
