Difference between revisions of "DapF"
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU32170&redirect=T BSU32170] | ||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU32170&redirect=T BSU32170] | ||
* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2OTN 2OTN] (from ''Bacillus anthracis str. ames'', 62% identity, 75% similarity) | * '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2OTN 2OTN] (from ''Bacillus anthracis str. ames'', 62% identity, 75% similarity) | ||
Revision as of 14:40, 2 April 2014
- Description: diaminopimelate epimerase
| Gene name | dapF |
| Synonyms | yutL |
| Essential | yes PubMed |
| Product | diaminopimelate epimerase |
| Function | biosynthesis of lysine and peptidoglycan |
| Gene expression levels in SubtiExpress: dapF | |
| Metabolic function and regulation of this protein in SubtiPathways: dapF | |
| MW, pI | 30 kDa, 4.506 |
| Gene length, protein length | 852 bp, 284 aa |
| Immediate neighbours | sufA, yutK |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
cell wall synthesis, biosynthesis/ acquisition of amino acids, Biosynthesis of cell wall components, essential genes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU32170
Phenotypes of a mutant
essential PubMed
Database entries
- BsubCyc: BSU32170
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: LL-diaminopimelate --> meso-diaminopimelate
- Protein family: diaminopimelate epimerase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
- Localization:
- cytoplasm (according to Swiss-Prot)
Database entries
- BsubCyc: BSU32170
- Structure: 2OTN (from Bacillus anthracis str. ames, 62% identity, 75% similarity)
- UniProt: O32114
- KEGG entry: [2]
- E.C. number: 5.1.1.7
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
