Difference between revisions of "YtrA"

From SubtiWiki
Jump to: navigation, search
Line 62: Line 62:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU30460&redirect=T BSU30460]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ytrABCDEF.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ytrABCDEF.html]
Line 97: Line 98:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU30460&redirect=T BSU30460]
  
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=3NEU 3NEU] (similar protein from ''Listeria innocua'', 41% identity)
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=3NEU 3NEU] (similar protein from ''Listeria innocua'', 41% identity)

Revision as of 14:34, 2 April 2014

Gene name ytrA
Synonyms
Essential no
Product transcriptional repressor (GntR family)
Function control of cell envelope stress responses
Gene expression levels in SubtiExpress: ytrA
Metabolic function and regulation of this protein in SubtiPathways:
ytrA
MW, pI 14 kDa, 8.094
Gene length, protein length 390 bp, 130 aa
Immediate neighbours ytrB, ytrG
Sequences Protein DNA DNA_with_flanks
Genetic context
YtrA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
500px
























Categories containing this gene/protein

transcription factors and their control, cold stress proteins, resistance against toxins/ antibiotics

This gene is a member of the following regulons

YtrA regulon

The YtrA regulon

The gene

Basic information

  • Locus tag: BSU30460

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 3NEU (similar protein from Listeria innocua, 41% identity)
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by ramoplanin (YtrA) PubMed
    • expressed early in the stationary phase PubMed
    • induced by cold shock (5-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Carsten L Beckering, Leif Steil, Michael H W Weber, Uwe Völker, Mohamed A Marahiel
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis.
J Bacteriol: 2002, 184(22);6395-402
[PubMed:12399512] [WorldCat.org] [DOI] (P p)

K I Yoshida, Y Fujita, S D Ehrlich
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.
J Bacteriol: 2000, 182(19);5454-61
[PubMed:10986249] [WorldCat.org] [DOI] (P p)