Difference between revisions of "GalM"

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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU18360&redirect=T BSU18360]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yoxA-dacC.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yoxA-dacC.html]
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU18360&redirect=T BSU18360]
  
 
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3MWX 3MWX]
 
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3MWX 3MWX]

Revision as of 13:51, 2 April 2014

  • Description: aldose-1-epimerase

Gene name galM
Synonyms yoxA
Essential no
Product aldose-1-epimerase (mutarotase)
Function unknown
Gene expression levels in SubtiExpress: galM
MW, pI 37 kDa, 5.602
Gene length, protein length 975 bp, 325 aa
Immediate neighbours dacC, yoeA
Sequences Protein DNA DNA_with_flanks
Genetic context
YoxA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
GalM expression.png
























Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

SigH regulon

The gene

Basic information

  • Locus tag: BSU18360

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: aldose-1-epimerase (mutarotase) PubMed
  • Protein family: peptidase S13 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Colette Duez, Astrid Zervosen, Nathalie Teller, Rémy Melkonian, Emmanuel Banzubazé, Fabrice Bouillenne, André Luxen, Jean-Marie Frère
Characterization of the proteins encoded by the Bacillus subtilis yoxA-dacC operon.
FEMS Microbiol Lett: 2009, 300(1);42-7
[PubMed:19758330] [WorldCat.org] [DOI] (I p)

A Petersohn, J Bernhardt, U Gerth, D Höper, T Koburger, U Völker, M Hecker
Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization.
J Bacteriol: 1999, 181(18);5718-24
[PubMed:10482513] [WorldCat.org] [DOI] (P p)

L B Pedersen, T Murray, D L Popham, P Setlow
Characterization of dacC, which encodes a new low-molecular-weight penicillin-binding protein in Bacillus subtilis.
J Bacteriol: 1998, 180(18);4967-73
[PubMed:9733705] [WorldCat.org] [DOI] (P p)