Difference between revisions of "YfmR"
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=== Additional information=== | === Additional information=== | ||
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=The protein= | =The protein= | ||
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | + | ** a paraloguous protein from ''E. coli'' (EttA) gates [[ribosome]] entry into the translation elongation cycle {{PubMed|24389466}} | |
* '''Protein family:''' | * '''Protein family:''' | ||
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yfmR_809557_811446_1 yfmR] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yfmR_809557_811446_1 yfmR] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
| − | <pubmed>10092453,, </pubmed> | + | <pubmed>10092453, 24389466, </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 13:47, 8 January 2014
- Description: similar to ABC transporter (ATP-binding protein)
| Gene name | yfmR |
| Synonyms | |
| Essential | no |
| Product | ABC transporter (ATP-binding protein) |
| Function | unknown |
| Gene expression levels in SubtiExpress: yfmR | |
| MW, pI | 70 kDa, 4.997 |
| Gene length, protein length | 1887 bp, 629 aa |
| Immediate neighbours | yfmS, yfmQ |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU07370
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O06476
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Grégory Boël, Paul C Smith, Wei Ning, Michael T Englander, Bo Chen, Yaser Hashem, Anthony J Testa, Jeffrey J Fischer, Hans-Joachim Wieden, Joachim Frank, Ruben L Gonzalez, John F Hunt
The ABC-F protein EttA gates ribosome entry into the translation elongation cycle.
Nat Struct Mol Biol: 2014, 21(2);143-51
[PubMed:24389466]
[WorldCat.org]
[DOI]
(I p)
Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453]
[WorldCat.org]
[DOI]
(P p)
