Difference between revisions of "YncD"

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(Extended information on the protein)
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* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  
+
* '''[[Domains]]:'''  
  
 
* '''Modification:'''
 
* '''Modification:'''
  
* '''Cofactor(s):'''
+
* '''[[Cofactors]]:'''
  
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' yncD (according to [http://dbtbs.hgc.jp/COG/prom/yncD.html DBTBS])
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* '''Operon:''' ''yncD'' (according to [http://dbtbs.hgc.jp/COG/prom/yncD.html DBTBS])
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=alrB_1897941_1899125_-1 yncD] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=alrB_1897941_1899125_-1 yncD] {{PubMed|22383849}}
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=References=
 
=References=
 
+
== Reviews ==
 +
<pubmed>23202530</pubmed>
 +
== Original publications ==
 
<pubmed>18399999,15699190,14523133, 22171814</pubmed>
 
<pubmed>18399999,15699190,14523133, 22171814</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 19:06, 4 January 2014

  • Description: spore coat alanine racemase

Gene name yncD
Synonyms alrB
Essential no
Product spore coat alanine racemase
Function protection of the spore
Gene expression levels in SubtiExpress: yncD
Metabolic function and regulation of this protein in SubtiPathways:
Alternative nitrogen sources
MW, pI 43 kDa, 9.593
Gene length, protein length 1182 bp, 394 aa
Immediate neighbours yncC, yncE
Sequences Protein DNA DNA_with_flanks
Genetic context
YncD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YncD expression.png















Categories containing this gene/protein

sporulation proteins, poorly characterized/ putative enzymes

This gene is a member of the following regulons

SigE regulon

The gene

Basic information

  • Locus tag: BSU17640

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: L-alanine = D-alanine (according to Swiss-Prot)
  • Protein family: alanine racemase family (according to Swiss-Prot)
  • Paralogous protein(s): Alr

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Operon: yncD (according to DBTBS)
  • Regulation:
    • expressed during sporulation in the mother cell (SigE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Peter T McKenney, Adam Driks, Patrick Eichenberger
The Bacillus subtilis endospore: assembly and functions of the multilayered coat.
Nat Rev Microbiol: 2013, 11(1);33-44
[PubMed:23202530] [WorldCat.org] [DOI] (I p)

Original publications