Difference between revisions of "YjdI"
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjdI_1277686_1278165_1 yjdI] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjdI_1277686_1278165_1 yjdI] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
| − | <pubmed> 15886196 14530268 16087664 </pubmed> | + | <pubmed> 15886196 14530268 16087664 24371276 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 14:20, 30 December 2013
- Description: similiar to Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase
| Gene name | yjdI |
| Synonyms | |
| Essential | no |
| Product | Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase |
| Function | maturation of tRNA |
| Gene expression levels in SubtiExpress: yjdI | |
| MW, pI | 17 kDa, 8.755 |
| Gene length, protein length | 477 bp, 159 aa |
| Immediate neighbours | yjdH, yjzH |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU12060
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
E. coli homolog: [2]
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31650
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Mom Das, Oscar Vargas-Rodriguez, Yuki Goto, Hiroaki Suga, Karin Musier-Forsyth
Distinct tRNA recognition strategies used by a homologous family of editing domains prevent mistranslation.
Nucleic Acids Res: 2014, 42(6);3943-53
[PubMed:24371276]
[WorldCat.org]
[DOI]
(I p)
Songon An, Karin Musier-Forsyth
Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex.
J Biol Chem: 2005, 280(41);34465-72
[PubMed:16087664]
[WorldCat.org]
[DOI]
(P p)
Benfang Ruan, Dieter Söll
The bacterial YbaK protein is a Cys-tRNAPro and Cys-tRNA Cys deacylase.
J Biol Chem: 2005, 280(27);25887-91
[PubMed:15886196]
[WorldCat.org]
[DOI]
(P p)
Fai-Chu Wong, Penny J Beuning, Carmen Silvers, Karin Musier-Forsyth
An isolated class II aminoacyl-tRNA synthetase insertion domain is functional in amino acid editing.
J Biol Chem: 2003, 278(52);52857-64
[PubMed:14530268]
[WorldCat.org]
[DOI]
(P p)
