Difference between revisions of "SspB"
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
− | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
− | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
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* '''Regulation:''' | * '''Regulation:''' | ||
** expressed during sporulation in the forespore ([[SigG]], [[SpoVT]]) {{PubMed|15699190,8755877}} | ** expressed during sporulation in the forespore ([[SigG]], [[SpoVT]]) {{PubMed|15699190,8755877}} | ||
+ | ** the mRNA accumulates in a ''[[ymdB]]'' mutant {{PubMed|24163345}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
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* '''Additional information:''' | * '''Additional information:''' | ||
+ | ** the mRNA half-life is about 13 min {{PubMed|24163345}} | ||
=Biological materials = | =Biological materials = | ||
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=References= | =References= | ||
− | + | <pubmed>16707666,1900507,2456528,3009398,11092849,7608092,15458366, 19542328 8755877 23064347 3087950 3125155 24163345</pubmed> | |
− | <pubmed>16707666,1900507,2456528,3009398,11092849,7608092,15458366, 19542328 8755877 23064347 3087950 3125155</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] |
Revision as of 17:45, 14 December 2013
- Description: small acid-soluble spore protein (major beta-type SASP)
Gene name | sspB |
Synonyms | |
Essential | no |
Product | small acid-soluble spore protein (major beta-type SASP) |
Function | protection of spore DNA |
Gene expression levels in SubtiExpress: sspB | |
MW, pI | 6 kDa, 4.791 |
Gene length, protein length | 201 bp, 67 aa |
Immediate neighbours | yheF, yheE |
Sequences | Protein DNA DNA_with_flanks |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU09750
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: alpha/beta-type SASP family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P04832
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: sspB PubMed
- Regulation:
- Additional information:
- the mRNA half-life is about 13 min PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion: GP996 (cat, based on pSG1151), available in the Stülke lab
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Christine Diethmaier, Joseph A Newman, Akos T Kovács, Volkhard Kaever, Christina Herzberg, Cecilia Rodrigues, Mirjam Boonstra, Oscar P Kuipers, Richard J Lewis, Jörg Stülke
The YmdB phosphodiesterase is a global regulator of late adaptive responses in Bacillus subtilis.
J Bacteriol: 2014, 196(2);265-75
[PubMed:24163345]
[WorldCat.org]
[DOI]
(I p)
Ralf Moeller, Andrew C Schuerger, Günther Reitz, Wayne L Nicholson
Protective role of spore structural components in determining Bacillus subtilis spore resistance to simulated mars surface conditions.
Appl Environ Microbiol: 2012, 78(24);8849-53
[PubMed:23064347]
[WorldCat.org]
[DOI]
(I p)
Ralf Moeller, Peter Setlow, Günther Reitz, Wayne L Nicholson
Roles of small, acid-soluble spore proteins and core water content in survival of Bacillus subtilis spores exposed to environmental solar UV radiation.
Appl Environ Microbiol: 2009, 75(16);5202-8
[PubMed:19542328]
[WorldCat.org]
[DOI]
(I p)
Barbara Setlow, Swaroopa Atluri, Ryan Kitchel, Kasia Koziol-Dube, Peter Setlow
Role of dipicolinic acid in resistance and stability of spores of Bacillus subtilis with or without DNA-protective alpha/beta-type small acid-soluble proteins.
J Bacteriol: 2006, 188(11);3740-7
[PubMed:16707666]
[WorldCat.org]
[DOI]
(P p)
Thierry Douki, Barbara Setlow, Peter Setlow
Effects of the binding of alpha/beta-type small, acid-soluble spore proteins on the photochemistry of DNA in spores of Bacillus subtilis and in vitro.
Photochem Photobiol: 2005, 81(1);163-9
[PubMed:15458366]
[WorldCat.org]
[DOI]
(P p)
B Setlow, K A McGinnis, K Ragkousi, P Setlow
Effects of major spore-specific DNA binding proteins on Bacillus subtilis sporulation and spore properties.
J Bacteriol: 2000, 182(24);6906-12
[PubMed:11092849]
[WorldCat.org]
[DOI]
(P p)
I Bagyan, J Hobot, S Cutting
A compartmentalized regulator of developmental gene expression in Bacillus subtilis.
J Bacteriol: 1996, 178(15);4500-7
[PubMed:8755877]
[WorldCat.org]
[DOI]
(P p)
B Setlow, P Setlow
Binding to DNA protects alpha/beta-type, small, acid-soluble spore proteins of Bacillus and Clostridium species against digestion by their specific protease as well as by other proteases.
J Bacteriol: 1995, 177(14);4149-51
[PubMed:7608092]
[WorldCat.org]
[DOI]
(P p)
P Fajardo-Cavazos, F Tovar-Rojo, P Setlow
Effect of promoter mutations and upstream deletions on the expression of genes coding for small, acid-soluble spore proteins of Bacillus subtilis.
J Bacteriol: 1991, 173(6);2011-6
[PubMed:1900507]
[WorldCat.org]
[DOI]
(P p)
J M Mason, P Fajardo-Cavazos, P Setlow
Levels of mRNAs which code for small, acid-soluble spore proteins and their LacZ gene fusions in sporulating cells of Bacillus subtilis.
Nucleic Acids Res: 1988, 16(14A);6567-83
[PubMed:2456528]
[WorldCat.org]
[DOI]
(P p)
R H Hackett, P Setlow
Properties of spores of Bacillus subtilis strains which lack the major small, acid-soluble protein.
J Bacteriol: 1988, 170(3);1403-4
[PubMed:3125155]
[WorldCat.org]
[DOI]
(P p)
J M Mason, P Setlow
Essential role of small, acid-soluble spore proteins in resistance of Bacillus subtilis spores to UV light.
J Bacteriol: 1986, 167(1);174-8
[PubMed:3087950]
[WorldCat.org]
[DOI]
(P p)
M J Connors, J M Mason, P Setlow
Cloning and nucleotide sequencing of genes for three small, acid-soluble proteins from Bacillus subtilis spores.
J Bacteriol: 1986, 166(2);417-25
[PubMed:3009398]
[WorldCat.org]
[DOI]
(P p)