Difference between revisions of "OpuCD"
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | + | {{SubtiWiki regulon|[[OpcR regulon]]}} | |
=The gene= | =The gene= | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=opuCD_3467546_3468235_-1 opuCD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=opuCD_3467546_3468235_-1 opuCD] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
| − | ** induced by salt stress {{PubMed|10216873}} | + | ** induced by salt stress {{PubMed|23960087,10216873}} |
| + | ** repressed by choline ([[OpcR]]) {{PubMed|23960087}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[OpcR]]: transcription repression {{PubMed|23960087}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
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=References= | =References= | ||
| − | <pubmed>10092453,9925583,10216873, 21296969 </pubmed> | + | <pubmed>10092453,9925583,10216873, 21296969 23960087</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 07:54, 22 August 2013
- Description: glycine betaine/carnitine/choline ABC transporter
| Gene name | opuCD |
| Synonyms | yvbB |
| Essential | no |
| Product | glycine betaine/carnitine/choline ABC transporter |
| Function | compatible solute transport |
| Gene expression levels in SubtiExpress: opuCD | |
| Interactions involving this protein in SubtInteract: OpuCD | |
| Metabolic function and regulation of this protein in SubtiPathways: Stress | |
| MW, pI | 24 kDa, 10.149 |
| Gene length, protein length | 687 bp, 229 aa |
| Immediate neighbours | sdpR, opuCC |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
ABC transporters, coping with hyper-osmotic stress, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU33800
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: CysTW subfamily (according to Swiss-Prot)
- Paralogous protein(s): OpuBD
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane PubMed
Database entries
- Structure:
- UniProt: O34742
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
