Difference between revisions of "YbaF"

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(Extended information on the protein)
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* '''[[SubtInteract|Interactions]]:'''
 
* '''[[SubtInteract|Interactions]]:'''
 
** ([[YbxA]]-[[YbaE]])-[[YbaF]] {{PubMed|10092453}}
 
** ([[YbxA]]-[[YbaE]])-[[YbaF]] {{PubMed|10092453}}
 +
** [[YbaF]]-[[ThiT]] {{PubMed|20497229}}
 +
** [[YbaF]]-[[RibU]] {{PubMed|20497229}}
 +
** [[YbaF]]-[[YuiG]] {{PubMed|20497229}}
 +
** [[YbaF]]-[[YhfU]] {{PubMed|20497229}}
 +
** [[YbaF]]-[[TrpP]] {{PubMed|20497229}}
  
* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
+
* '''[[Localization]]:'''  
 +
** cell membrane {{PubMed|20497229}}
  
 
=== Database entries ===
 
=== Database entries ===

Revision as of 19:20, 13 July 2013

Gene name ybaF
Synonyms ecfT
Essential no
Product ECF transporter (membrane-spanning protein)
Function uptake of micronutrients
Gene expression levels in SubtiExpress: ybaF
Interactions involving this protein in SubtInteract: YbaF
MW, pI 29 kDa, 10.175
Gene length, protein length 795 bp, 265 aa
Immediate neighbours ybaE, truA
Sequences Protein DNA DNA_with_flanks
Genetic context
YbaF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbaF expression.png















Categories containing this gene/protein

ECF transporter, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU01470

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
    • 4HUQ (EcfA1-EcfA2-EcfT-FolT complex of Lactobacillus brevis), PubMed
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Thomas Eitinger, Dmitry A Rodionov, Mathias Grote, Erwin Schneider
Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions.
FEMS Microbiol Rev: 2011, 35(1);3-67
[PubMed:20497229] [WorldCat.org] [DOI] (I p)

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)

Original publications