Difference between revisions of "YbaF"
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* '''[[SubtInteract|Interactions]]:''' | * '''[[SubtInteract|Interactions]]:''' | ||
** ([[YbxA]]-[[YbaE]])-[[YbaF]] {{PubMed|10092453}} | ** ([[YbxA]]-[[YbaE]])-[[YbaF]] {{PubMed|10092453}} | ||
| + | ** [[YbaF]]-[[ThiT]] {{PubMed|20497229}} | ||
| + | ** [[YbaF]]-[[RibU]] {{PubMed|20497229}} | ||
| + | ** [[YbaF]]-[[YuiG]] {{PubMed|20497229}} | ||
| + | ** [[YbaF]]-[[YhfU]] {{PubMed|20497229}} | ||
| + | ** [[YbaF]]-[[TrpP]] {{PubMed|20497229}} | ||
| − | * '''[[Localization]]:''' cell membrane | + | * '''[[Localization]]:''' |
| + | ** cell membrane {{PubMed|20497229}} | ||
=== Database entries === | === Database entries === | ||
Revision as of 19:20, 13 July 2013
- Description: trans-membrane T component of ECF transporters
| Gene name | ybaF |
| Synonyms | ecfT |
| Essential | no |
| Product | ECF transporter (membrane-spanning protein) |
| Function | uptake of micronutrients |
| Gene expression levels in SubtiExpress: ybaF | |
| Interactions involving this protein in SubtInteract: YbaF | |
| MW, pI | 29 kDa, 10.175 |
| Gene length, protein length | 795 bp, 265 aa |
| Immediate neighbours | ybaE, truA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
ECF transporter, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU01470
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: cbiQ family, T proteins of ECF transporters
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane PubMed
Database entries
- UniProt: P70972
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Thomas Eitinger, Dmitry A Rodionov, Mathias Grote, Erwin Schneider
Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions.
FEMS Microbiol Rev: 2011, 35(1);3-67
[PubMed:20497229]
[WorldCat.org]
[DOI]
(I p)
Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453]
[WorldCat.org]
[DOI]
(P p)
Original publications
Ke Xu, Minhua Zhang, Qin Zhao, Fang Yu, Hui Guo, Chengyuan Wang, Fangyuan He, Jianping Ding, Peng Zhang
Crystal structure of a folate energy-coupling factor transporter from Lactobacillus brevis.
Nature: 2013, 497(7448);268-71
[PubMed:23584589]
[WorldCat.org]
[DOI]
(I p)
Josy ter Beek, Ria H Duurkens, Guus B Erkens, Dirk Jan Slotboom
Quaternary structure and functional unit of energy coupling factor (ECF)-type transporters.
J Biol Chem: 2011, 286(7);5471-5
[PubMed:21135102]
[WorldCat.org]
[DOI]
(I p)
