Difference between revisions of "RpsJ"
| Line 93: | Line 93: | ||
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
| + | ** located near the aminoacyl-tRNA site of the 30S ribosomal subunit {{PubMed|23759864}} | ||
=== Database entries === | === Database entries === | ||
| Line 111: | Line 112: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpsJ_135364_135672_1 rpsJ] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpsJ_135364_135672_1 rpsJ] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
** [[SigA]] two promoters, about 140bp and 200bp upstream of the start codon {{PubMed|9371452}} | ** [[SigA]] two promoters, about 140bp and 200bp upstream of the start codon {{PubMed|9371452}} | ||
| Line 145: | Line 146: | ||
<pubmed> 15621428 </pubmed> | <pubmed> 15621428 </pubmed> | ||
==Original publications== | ==Original publications== | ||
| − | + | <pubmed> 19653700, 9371452 11948165 8635744 23759864 23002217< /pubmed> | |
| − | <pubmed> 19653700, 9371452 11948165 8635744</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:06, 14 June 2013
- Description: ribosomal protein
| Gene name | rpsJ |
| Synonyms | tetA |
| Essential | yes PubMed |
| Product | ribosomal protein S10 (BS13) |
| Function | translation |
| Gene expression levels in SubtiExpress: rpsJ | |
| Interactions involving this protein in SubtInteract: RpsJ | |
| MW, pI | 11 kDa, 10.207 |
| Gene length, protein length | 306 bp, 102 aa |
| Immediate neighbours | ybaC, rplC |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
translation, essential genes, universally conserved proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU01150
Phenotypes of a mutant
essential PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ribosomal protein S10P family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- located near the aminoacyl-tRNA site of the 30S ribosomal subunit PubMed
Database entries
- Structure:
- UniProt: P21471
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon: rpsJ-rplC-rplD-rplW-rplB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ-rplN-rplX-rplE-rpsN-rpsH-rplF-rplR-rpsE-rpmD-rplO PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Tom Coenye, Peter Vandamme
Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes.
FEMS Microbiol Lett: 2005, 242(1);117-26
[PubMed:15621428]
[WorldCat.org]
[DOI]
(P p)
Original publications
<pubmed> 19653700, 9371452 11948165 8635744 23759864 23002217< /pubmed>
