Difference between revisions of "YlyA"
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| − | * '''Description:''' [[ | + | * '''Description:''' modulator of [[SigG]]-containing [[RNA polymerase]] <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || [[ | + | |style="background:#ABCDEF;" align="center"| '''Product''' || modulator of [[SigG]]-containing [[RNA polymerase]] |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigG]]-dependent transcription |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15440 ylyA] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15440 ylyA] | ||
| Line 72: | Line 72: | ||
* '''Protein family:''' | * '''Protein family:''' | ||
| − | * '''Paralogous protein(s):''' [[YteA]] | + | * '''Paralogous protein(s):''' [[YteA]], [[YocK]] |
=== Extended information on the protein === | === Extended information on the protein === | ||
| Line 87: | Line 87: | ||
* '''[[SubtInteract|Interactions]]:''' | * '''[[SubtInteract|Interactions]]:''' | ||
| − | + | * [[YlyA]]-core [[RNA polymerase]] {{PubMed|23678950}} | |
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
** located at the cell periphery {{PubMed|18720851}} | ** located at the cell periphery {{PubMed|18720851}} | ||
| Line 109: | Line 109: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylyA_1616267_1616641_1 ylyA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylyA_1616267_1616641_1 ylyA] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigG]] {{PubMed|23123912}} | + | * '''[[Sigma factor]]:''' [[SigG]] {{PubMed|23123912}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 139: | Line 139: | ||
=References= | =References= | ||
| − | <pubmed> 23123912 18720851 22383849</pubmed> | + | <pubmed> 23123912 18720851 22383849 23678950 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 17:22, 24 May 2013
- Description: modulator of SigG-containing RNA polymerase
| Gene name | ylyA |
| Synonyms | ylmK |
| Essential | no |
| Product | modulator of SigG-containing RNA polymerase |
| Function | control of SigG-dependent transcription |
| Gene expression levels in SubtiExpress: ylyA | |
| MW, pI | 16 kDa, 5.789 |
| Gene length, protein length | 441 bp, 147 aa |
| Immediate neighbours | ileS, lspA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU15440
Phenotypes of a mutant
- defective in spore germination efficiency PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- YlyA-core RNA polymerase PubMed
- Localization:
- located at the cell periphery PubMed
Database entries
- Structure:
- UniProt: Q45478
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- expressed late during sporulation in the forespore (SigG, SpoVT) PubMed
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
